Literature DB >> 9867436

On the ab initio solution of the phase problem or macromolecules at very low resolution. II. Generalized likelihood based approach to cluster discrimination.

V Y Lunin1, N L Lunina, T E Petrova, A G Urzhumtsev, A D Podjarny.   

Abstract

The multisolution strategies for direct phasing at very low resolution, such as the few atoms model technique, result in a number of alternative phase sets, each of them arising from a cluster of closely related models. Use of a Monte-Carlo type computer procedure is suggested to choose between the possible phase sets. It consists of generating a large number of pseudo-atom models inside the mask defined by a trial phase set and the use of histograms of magnitude correlation to evaluate the masks. It is shown that the procedure may be considered as a generalization of the statistical maximum-likelihood principle and may be used as a powerful supplementary tool in the likelihood-based approaches to the phase problem solution.

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Year:  1998        PMID: 9867436     DOI: 10.1107/s0907444997012456

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  3 in total

1.  On the direct determination of three-dimensional crystallographic phases at low resolution: crambin at 6 A.

Authors:  D L Dorset
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Cluster analysis for phasing with molecular replacement: a feasibility study.

Authors:  Andreas Buehler; Ludmila Urzhumtseva; Vladimir Y Lunin; Alexandre Urzhumtsev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

3.  CrowdPhase: crowdsourcing the phase problem.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-23
  3 in total

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