Literature DB >> 9866711

Determination of binding constants by equilibrium titration with circulating sample in a surface plasmon resonance biosensor.

P Schuck1, D B Millar, A A Kortt.   

Abstract

A commercial surface plasmon resonance biosensor, BIACORE X, is employed as a detector in a closed loop of a small sample volume. The sample is continuously circulated by an external syringe pump over two sensor spots, one functionalized with immobilized binding sites to a soluble binding partner in the mobile phase and one serving as a reference surface. A binding isotherm for the interacting macromolecules can be obtained by a stepwise titration of the soluble reactant into the circulating loop, each step followed by observation of the signal increase until equilibrium is attained. Binding constants can be measured under conditions free of mass transport artifacts and without the requirement for regeneration of the immobilized binding sites. This procedure is similar to the stepwise titration procedure described for the cuvette-based sensor design (D. R. Hall and D. J. Winzor, 1997, Anal. Biochem. 244, 152-160). In the presented configuration, the high baseline stability of the instrument combined with the availability of a reference surface for the detection of nonspecific binding permits refractive index changes upon addition of the aliquots to be measured, as well as accounting for temperature or instrumental drifts, and allows for a very long experimental time. This feature extends the applicability of equilibrium titration to systems with higher affinity or slower dissociation rate constants. Furthermore a solution competition titration is described that avoids artifacts from the immobilization procedure to provide a method for measurement of binding constants in solution. Kinetic information on the complex dissociation can also be obtained by combination of sample delivery via the external pump with the injection of competitor via the microfluidics of the biosensor. The rapid injection of high concentrations of competitor allows the observation of fast dissociation processes under conditions minimizing rebinding.

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Year:  1998        PMID: 9866711     DOI: 10.1006/abio.1998.2872

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  11 in total

1.  Combined affinity and rate constant distributions of ligand populations from experimental surface binding kinetics and equilibria.

Authors:  Juraj Svitel; Andrea Balbo; Roy A Mariuzza; Noreen R Gonzales; Peter Schuck
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Probing the functional heterogeneity of surface binding sites by analysis of experimental binding traces and the effect of mass transport limitation.

Authors:  Juraj Svitel; Hacène Boukari; Donald Van Ryk; Richard C Willson; Peter Schuck
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

3.  Ligand rebinding: self-consistent mean-field theory and numerical simulations applied to surface plasmon resonance studies.

Authors:  Manoj Gopalakrishnan; Kimberly Forsten-Williams; Theresa R Cassino; Luz Padro; Thomas E Ryan; Uwe C Täuber
Journal:  Eur Biophys J       Date:  2005-04-06       Impact factor: 1.733

4.  A comparison of binding surfaces for SPR biosensing using an antibody-antigen system and affinity distribution analysis.

Authors:  Huaying Zhao; Inna I Gorshkova; Gregory L Fu; Peter Schuck
Journal:  Methods       Date:  2012-12-24       Impact factor: 3.608

5.  Global multi-method analysis of affinities and cooperativity in complex systems of macromolecular interactions.

Authors:  Huaying Zhao; Peter Schuck
Journal:  Anal Chem       Date:  2012-10-16       Impact factor: 6.986

Review 6.  The role of mass transport limitation and surface heterogeneity in the biophysical characterization of macromolecular binding processes by SPR biosensing.

Authors:  Peter Schuck; Huaying Zhao
Journal:  Methods Mol Biol       Date:  2010

7.  Measuring Protein Interactions by Optical Biosensors.

Authors:  Huaying Zhao; Lisa F Boyd; Peter Schuck
Journal:  Curr Protoc Protein Sci       Date:  2017-04-03

8.  HLA-DM recognizes the flexible conformation of major histocompatibility complex class II.

Authors:  C L Chou; S Sadegh-Nasseri
Journal:  J Exp Med       Date:  2000-12-18       Impact factor: 14.307

9.  Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS).

Authors:  Fang Yu; Danfeng Yao; Wolfgang Knoll
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

10.  Analysis of protein interactions with picomolar binding affinity by fluorescence-detected sedimentation velocity.

Authors:  Huaying Zhao; Mark L Mayer; Peter Schuck
Journal:  Anal Chem       Date:  2014-03-05       Impact factor: 6.986

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