Literature DB >> 9865962

Solution structure of the His12 --> Cys mutant of the N-terminal zinc binding domain of HIV-1 integrase complexed to cadmium.

M Cai1, Y Huang, M Caffrey, R Zheng, R Craigie, G M Clore, A M Gronenborn.   

Abstract

The solution structure of His12 --> Cys mutant of the N-terminal zinc binding domain (residues 1-55; IN(1-55)) of HIV-1 integrase complexed to cadmium has been solved by multidimensional heteronuclear NMR spectroscopy. The overall structure is very similar to that of the wild-type N-terminal domain complexed to zinc. In contrast to the wild-type domain, however, which exists in two interconverting conformational states arising from different modes of coordination of the two histidine side chains to the metal, the cadmium complex of the His12 --> Cys mutant exists in only a single form at low pH. The conformation of the polypeptide chain encompassing residues 10-18 is intermediate between the two forms of the wild-type complex.

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Year:  1998        PMID: 9865962      PMCID: PMC2143878          DOI: 10.1002/pro.5560071221

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  17 in total

1.  Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.

Authors:  M Cai; R Zheng; M Caffrey; R Craigie; G M Clore; A M Gronenborn
Journal:  Nat Struct Biol       Date:  1997-07

2.  Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Science       Date:  1991-06-07       Impact factor: 47.728

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations.

Authors:  M Nilges; G M Clore; A M Gronenborn
Journal:  FEBS Lett       Date:  1988-03-14       Impact factor: 4.124

5.  An efficient and cost-effective isotope labeling protocol for proteins expressed in Escherichia coli.

Authors:  M Cai; Y Huang; K Sakaguchi; G M Clore; A M Gronenborn; R Craigie
Journal:  J Biomol NMR       Date:  1998-01       Impact factor: 2.835

Review 6.  Cadmium-113 nuclear magnetic resonance applied to metalloproteins.

Authors:  J E Coleman
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

7.  Domains of the integrase protein of human immunodeficiency virus type 1 responsible for polynucleotidyl transfer and zinc binding.

Authors:  F D Bushman; A Engelman; I Palmer; P Wingfield; R Craigie
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

Review 8.  Determining the structures of large proteins and protein complexes by NMR.

Authors:  G M Clore; A M Gronenborn
Journal:  Trends Biotechnol       Date:  1998-01       Impact factor: 19.536

9.  Engineering the zinc binding site of human carbonic anhydrase II: structure of the His-94-->Cys apoenzyme in a new crystalline form.

Authors:  R S Alexander; L L Kiefer; C A Fierke; D W Christianson
Journal:  Biochemistry       Date:  1993-02-16       Impact factor: 3.162

10.  Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques.

Authors:  J G Pelton; D A Torchia; N D Meadow; S Roseman
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

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  16 in total

Review 1.  Retroviral DNA integration.

Authors:  P Hindmarsh; J Leis
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding.

Authors:  J C Chen; J Krucinski; L J Miercke; J S Finer-Moore; A H Tang; A D Leavitt; R M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

Review 3.  Allosteric inhibitor development targeting HIV-1 integrase.

Authors:  Laith Q Al-Mawsawi; Nouri Neamati
Journal:  ChemMedChem       Date:  2011-01-12       Impact factor: 3.466

4.  Allosteric HIV Integrase Inhibitors Promote Formation of Inactive Branched Polymers via Homomeric Carboxy-Terminal Domain Interactions.

Authors:  Kushol Gupta; Audrey Allen; Carolina Giraldo; Grant Eilers; Robert Sharp; Young Hwang; Hemma Murali; Katrina Cruz; Paul Janmey; Frederic Bushman; Gregory D Van Duyne
Journal:  Structure       Date:  2020-12-23       Impact factor: 5.006

5.  The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain.

Authors:  Balasubramanian Sangeetha; Rajagopalan Muthukumaran; Ramaswamy Amutha
Journal:  Eur Biophys J       Date:  2014-08-09       Impact factor: 1.733

6.  Refined solution structure of the dimeric N-terminal HHCC domain of HIV-2 integrase.

Authors:  A P Eijkelenboom; F M van den Ent; R Wechselberger; R H Plasterk; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

7.  A three-dimensional model of the human immunodeficiency virus type 1 integration complex.

Authors:  Jerome Wielens; Ian T Crosby; David K Chalmers
Journal:  J Comput Aided Mol Des       Date:  2005-05       Impact factor: 3.686

8.  Molecular dynamics approaches estimate the binding energy of HIV-1 integrase inhibitors and correlate with in vitro activity.

Authors:  Barry C Johnson; Mathieu Métifiot; Yves Pommier; Stephen H Hughes
Journal:  Antimicrob Agents Chemother       Date:  2011-10-28       Impact factor: 5.191

Review 9.  Piecing together the structure of retroviral integrase, an important target in AIDS therapy.

Authors:  Mariusz Jaskolski; Jerry N Alexandratos; Grzegorz Bujacz; Alexander Wlodawer
Journal:  FEBS J       Date:  2009-04-14       Impact factor: 5.542

10.  The correlation of 113Cd NMR and 111mCd PAC spectroscopies provides a powerful approach for the characterization of the structure of Cd(II)-substituted Zn(II) proteins.

Authors:  Olga Iranzo; Tamas Jakusch; Kyung-Hoon Lee; Lars Hemmingsen; Vincent L Pecoraro
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

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