Literature DB >> 9860849

Nitrogenase of Azotobacter vinelandii: kinetic analysis of the Fe protein redox cycle.

M G Duyvis1, H Wassink, H Haaker.   

Abstract

Nitrogenase consists of two metalloproteins (Fe protein and MoFe protein) which are assumed to associate and dissociate to transfer a single electron to the substrates. This cycle, called the Fe protein cycle, is driven by MgATP hydrolysis and is repeated until the substrates are completely reduced. The rate-limiting step of the cycle, and substrate reduction, is suggested to be the dissociation of the Fe protein-MoFe protein complex which is obligatory for the reduction of the Fe protein [Thorneley, R. N. F., and Lowe, D. J. (1983) Biochem. J. 215, 393-403]. This hypothesis is based on experiments with dithionite as the reductant. We also tested besides dithionite flavodoxin hydroquinone, a physiological reductant. Two models could describe the experimental data of the reduction by dithionite. The first model, with no reduction of Fe protein bound to MoFe protein, predicts a rate of dissociation of the protein complex of 8.1 s-1. This rate is too high to be the rate-limiting step of the Fe protein cycle (kobs = 3.0 s-1). The second model, with reduction of the Fe protein in the nitrogenase complex, predicts a rate of dissociation of the protein complex of 2.3 s-1, which in combination with reduction of the nitrogenase complex can account for the observed turnover rate of the Fe protein cycle. When flavodoxin hydroquinone (155 microM) was the reductant, the rate of reduction of oxidized Fe protein in the nitrogenase complex (kobs approximately 400 s-1) was 100 times faster than the turnover rate of the cycle with flavodoxin as the reductant (4 s-1). Pre-steady-state electron uptake experiments from flavodoxin hydroquinone indicate that before and after reduction of the nitrogenase complex relative slow reactions take place, which limits the rate of the Fe protein cycle. These results are discussed in the context of the kinetic models of the Fe protein cycle of nitrogenase.

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Year:  1998        PMID: 9860849     DOI: 10.1021/bi981509y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Unraveling the interactions of the physiological reductant flavodoxin with the different conformations of the Fe protein in the nitrogenase cycle.

Authors:  Natasha Pence; Monika Tokmina-Lukaszewska; Zhi-Yong Yang; Rhesa N Ledbetter; Lance C Seefeldt; Brian Bothner; John W Peters
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

2.  A crystallographic study of Cys69Ala flavodoxin II from Azotobacter vinelandii: structural determinants of redox potential.

Authors:  Sharmini Alagaratnam; Gertie van Pouderoyen; Tjaard Pijning; Bauke W Dijkstra; Davide Cavazzini; Gian Luigi Rossi; Walter M A M Van Dongen; Carlo P M van Mierlo; Willem J H van Berkel; Gerard W Canters
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

Review 3.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 4.  Electron Transfer in Nitrogenase.

Authors:  Hannah L Rutledge; F Akif Tezcan
Journal:  Chem Rev       Date:  2020-01-30       Impact factor: 60.622

5.  Effect of oxygen on formation and structure of Azotobacter vinelandii alginate and its role in protecting nitrogenase.

Authors:  W Sabra; A P Zeng; H Lünsdorf; W D Deckwer
Journal:  Appl Environ Microbiol       Date:  2000-09       Impact factor: 4.792

6.  Flavodoxin hydroquinone reduces Azotobacter vinelandii Fe protein to the all-ferrous redox state with a S = 0 spin state.

Authors:  Thomas J Lowery; Phillip E Wilson; Bo Zhang; Jared Bunker; Roger G Harrison; Andrew C Nyborg; David Thiriot; Gerald D Watt
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-03       Impact factor: 11.205

Review 7.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

8.  Biosynthesis of (bacterio)chlorophylls: ATP-dependent transient subunit interaction and electron transfer of dark operative protochlorophyllide oxidoreductase.

Authors:  Markus J Bröcker; Denise Wätzlich; Miguel Saggu; Friedhelm Lendzian; Jürgen Moser; Dieter Jahn
Journal:  J Biol Chem       Date:  2010-01-14       Impact factor: 5.157

9.  Conformationally Gated Electron Transfer in Nitrogenase. Isolation, Purification, and Characterization of Nitrogenase From Gluconacetobacter diazotrophicus.

Authors:  Cedric P Owens; Faik A Tezcan
Journal:  Methods Enzymol       Date:  2017-12-06       Impact factor: 1.600

Review 10.  Mechanism of nitrogen fixation by nitrogenase: the next stage.

Authors:  Brian M Hoffman; Dmitriy Lukoyanov; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt
Journal:  Chem Rev       Date:  2014-01-27       Impact factor: 60.622

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