Literature DB >> 9858460

Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences.

T Miyake1, K Watanabe, T Watanabe, H Oyaizu.   

Abstract

The 16S rRNA gene sequences were determined for type strains of 21 Bifidobacterium species. A phylogenetic tree was constructed using the determined sequences and sequences from DNA databases, which contain the sequences of 11 type strains of Bifidobacterium species and 11 strains of related genera. All species of the genus Bifidobacterium and Gardnerella vaginalis ATCC 14018 belonged to a cluster phylogenetically distinct from the other genera. The cluster was divided into two subclusters: subcluster 1 composed of most species of Bifidobacterium and G. vaginalis, and subcluster 2 consisting of two species, B. denticolens and B. inopinatum; both of which were isolated from human dental caries. In the genus Bifidobacterium, four groups of species are known to be moderately to highly related by DNA-DNA hybridization. The four groups of species exhibited more than 99% similarity among their 16S rDNA sequences within each group. These results indicated that species with around 99% or more similarity in their 16S rDNA sequences should be confirmed for species identities.

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Year:  1998        PMID: 9858460     DOI: 10.1111/j.1348-0421.1998.tb02337.x

Source DB:  PubMed          Journal:  Microbiol Immunol        ISSN: 0385-5600            Impact factor:   1.955


  28 in total

1.  Colonization of the stratified squamous epithelium of the nonsecreting area of horse stomach by lactobacilli.

Authors:  N Yuki; T Shimazaki; A Kushiro; K Watanabe; K Uchida; T Yuyama; M Morotomi
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

2.  Genomic diversity and relatedness of bifidobacteria isolated from a porcine cecum.

Authors:  P J Simpson; C Stanton; G F Fitzgerald; R P Ross
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

3.  Quantification of human fecal bifidobacterium species by use of quantitative real-time PCR analysis targeting the groEL gene.

Authors:  Jana Junick; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

4.  Bifidobacterial diversity determined by culturing and by 16S rDNA sequence analysis in feces and mucosa from ten healthy Spanish adults.

Authors:  Susana Delgado; Adolfo Suárez; Baltasar Mayo
Journal:  Dig Dis Sci       Date:  2006-10       Impact factor: 3.199

5.  Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis.

Authors:  R M Satokari; E E Vaughan; A D Akkermans; M Saarela; W M de Vos
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

6.  Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces.

Authors:  Takahiro Matsuki; Koichi Watanabe; Junji Fujimoto; Yukiko Miyamoto; Toshihiko Takada; Kazumasa Matsumoto; Hiroshi Oyaizu; Ryuichiro Tanaka
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

7.  Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers.

Authors:  T Matsuki; K Watanabe; R Tanaka; M Fukuda; H Oyaizu
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

8.  Transmission of intestinal Bifidobacterium longum subsp. longum strains from mother to infant, determined by multilocus sequencing typing and amplified fragment length polymorphism.

Authors:  Hiroshi Makino; Akira Kushiro; Eiji Ishikawa; Delphine Muylaert; Hiroyuki Kubota; Takafumi Sakai; Kenji Oishi; Rocio Martin; Kaouther Ben Amor; Raish Oozeer; Jan Knol; Ryuichiro Tanaka
Journal:  Appl Environ Microbiol       Date:  2011-08-05       Impact factor: 4.792

9.  Bifidobacteria in feces and environmental waters.

Authors:  Regina Lamendella; Jorge W Santo Domingo; Catherine Kelty; Daniel B Oerther
Journal:  Appl Environ Microbiol       Date:  2007-11-09       Impact factor: 4.792

10.  Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the intestine after feeding of sows and their piglets.

Authors:  Gloria Solano-Aguilar; Harry Dawson; Marta Restrepo; Kate Andrews; Bryan Vinyard; Joseph F Urban
Journal:  Appl Environ Microbiol       Date:  2008-08-08       Impact factor: 4.792

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