Literature DB >> 9853623

Prediction of antisense oligonucleotide efficacy by in vitro methods.

O Matveeva1, B Felden, A Tsodikov, J Johnston, B P Monia, J F Atkins, R F Gesteland, S M Freier.   

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Year:  1998        PMID： 9853623     DOI： 10.1038/4362

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  8 in total

1.  Predicting oligonucleotide affinity to nucleic acid targets.

Authors:  D H Mathews; M E Burkard; S M Freier; J R Wyatt; D H Turner
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Artificial neural network prediction of antisense oligodeoxynucleotide activity.

Authors:  Michael C Giddings; Atul A Shah; Sue Freier; John F Atkins; Raymond F Gesteland; Olga V Matveeva
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

3.  Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA.

Authors:  S Patrick Walton; Gregory N Stephanopoulos; Martin L Yarmush; Charles M Roth
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

4.  Mapping of RNA accessible sites by extension of random oligonucleotide libraries with reverse transcriptase.

Authors:  H T Allawi; F Dong; H S Ip; B P Neri; V I Lyamichev
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

5.  Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond.

Authors:  Y Ding; C E Lawrence
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

6.  Determination of optimal sites of antisense oligonucleotide cleavage within TNFalpha mRNA.

Authors:  B H Lloyd; R V Giles; D G Spiller; J Grzybowski; D M Tidd; D R Sibson
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

7.  mRNA accessible site tagging (MAST): a novel high throughput method for selecting effective antisense oligonucleotides.

Authors:  Hong-Yan Zhang; Jianping Mao; Daixing Zhou; Yunhe Xu; Håkan Thonberg; Zicai Liang; Claes Wahlestedt
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

8.  Selection of antisense oligonucleotides based on multiple predicted target mRNA structures.

Authors:  Xiaochen Bo; Shaoke Lou; Daochun Sun; Wenjie Shu; Jing Yang; Shengqi Wang
Journal:  BMC Bioinformatics       Date:  2006-03-09       Impact factor: 3.169
  8 in total

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