Literature DB >> 9852764

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases.

S F Altschul1, E V Koonin.   

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Year:  1998        PMID： 9852764     DOI： 10.1016/s0968-0004(98)01298-5

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


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  225 in total

1.  PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Authors:  J Qian; B Stenger; C A Wilson; J Lin; R Jansen; S A Teichmann; J Park; W G Krebs; H Yu; V Alexandrov; N Echols; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

2.  Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum.

Authors:  G Subramanian; E V Koonin; L Aravind
Journal:  Infect Immun       Date:  2000-03       Impact factor: 3.441

3.  HYR, an extracellular module involved in cellular adhesion and related to the immunoglobulin-like fold.

Authors:  I Callebaut; D Gilgès; I Vigon; J P Mornon
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

4.  Two tricks in one bundle: helix-turn-helix gains enzymatic activity.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

5.  Common fold in helix-hairpin-helix proteins.

Authors:  X Shao; N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

6.  Common origin of four diverse families of large eukaryotic DNA viruses.

Authors:  L M Iyer; L Aravind; E V Koonin
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

7.  A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Authors:  Kira S Makarova; L Aravind; Nick V Grishin; Igor B Rogozin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

Review 8.  Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

Authors:  A A Schäffer; L Aravind; T L Madden; S Shavirin; J L Spouge; Y I Wolf; E V Koonin; S F Altschul
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

Review 9.  PAS domains: internal sensors of oxygen, redox potential, and light.

Authors:  B L Taylor; I B Zhulin
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

10.  The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds.

Authors:  Parag Mallick; Robert Weiss; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205
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