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Literature DB >> 9847231

AAindex: Amino Acid Index Database.

Abstract

AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AAindex1 for the amino acid index of 20 numerical values and AAindex2 for the amino acid mutation matrix of 210 numerical values. Each entry of either AAindex1 or AAindex2 consists of the definition, the reference information, a list of related entries in terms of the correlation coefficient, and the actual data. The database may be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.ad. jp/dbget/) or may be downloaded by anonymous FTP (ftp://ftp.genome. ad.jp/db/genomenet/aaindex/).

Mesh：

Substances：
Amino Acids

Year: 1999 PMID： 9847231 PMCID： PMC148186 DOI： 10.1093/nar/27.1.368

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

Keyword Cloud
Cited

121 in total

1. AAindex: amino acid index database.

Authors: S Kawashima; M Kanehisa
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. SySAP: a system-level predictor of deleterious single amino acid polymorphisms.

Authors: Tao Huang; Chuan Wang; Guoqing Zhang; Lu Xie; Yixue Li
Journal: Protein Cell Date: 2011-12-19 Impact factor: 14.870

3. Real value prediction of protein folding rate change upon point mutation.

Authors: Liang-Tsung Huang; M Michael Gromiha
Journal: J Comput Aided Mol Des Date: 2012-03-18 Impact factor: 3.686

4. Prediction of inter-residue contact clusters from hydrophobic cores.

Authors: Peng Chen; Chunmei Liu; Legand Burge; Mohammad Mahmood; William Southerland; Clay Gloster
Journal: Int J Data Min Bioinform Date: 2008-12-11 Impact factor: 0.667

5. Predicting protein crystallization propensity from protein sequence.

Authors: György Babnigg; Andrzej Joachimiak
Journal: J Struct Funct Genomics Date: 2010-02-23

6. Use of thioredoxin as a reporter to identify a subset of Escherichia coli signal sequences that promote signal recognition particle-dependent translocation.

Authors: Damon Huber; Dana Boyd; Yu Xia; Michael H Olma; Mark Gerstein; Jon Beckwith
Journal: J Bacteriol Date: 2005-05 Impact factor: 3.490

AAindex: Amino Acid Index Database.

1. AAindex: amino acid index database.

2. SySAP: a system-level predictor of deleterious single amino acid polymorphisms.

3. Real value prediction of protein folding rate change upon point mutation.

4. Prediction of inter-residue contact clusters from hydrophobic cores.

5. Predicting protein crystallization propensity from protein sequence.

6. Use of thioredoxin as a reporter to identify a subset of Escherichia coli signal sequences that promote signal recognition particle-dependent translocation.

7. A hybrid genetic-neural system for predicting protein secondary structure.

8. Amino acid partitioning using a Fiedler vector model.

9. Protein sumoylation sites prediction based on two-stage feature selection.

10. AL-Base: a visual platform analysis tool for the study of amyloidogenic immunoglobulin light chain sequences.