Literature DB >> 9847195

The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments.

J Murvai1, K Vlahovicek, E Barta, C Szepesvári, C Acatrinei, S Pongor.   

Abstract

The sixth release of the SBASE protein domain library sequences contains 130 703 annotated and crossreferenced entries corresponding to structural, functional, ligand-binding and topogenic segments of proteins. The entries were grouped based on standard names (2312 groups) and futher classified on the basis of the BLAST similarity (2463 clusters). Automated searching with BLAST and a new sequence-plot representation of local domain similarities are available at the WWW-server http://www.icgeb.trieste.it/sbase. A mirror site is at http://sbase.abc.hu/sbase. The database is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it

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Year:  1999        PMID： 9847195      PMCID： PMC148150          DOI： 10.1093/nar/27.1.257

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  3 in total

1.  The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Proteins of circularly permuted sequence present within the same organism: the major serine proteinase inhibitor from Capsicum annuum seeds.

Authors:  N Antcheva; A Pintar; A Patthy; A Simoncsits; E Barta; B Tchorbanov; S Pongor
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity.

Authors:  Maria Novatchkova; Georg Schneider; Richard Fritz; Frank Eisenhaber; Alexander Schleiffer
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971
  3 in total

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