Literature DB >> 9847194

SCOP: a Structural Classification of Proteins database.

T J Hubbard1, B Ailey, S E Brenner, A G Murzin, C Chothia.   

Abstract

The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary relationships; the third, fold, describes geometrical relationships. The distinction between evolutionary relationships and those that arise from the physics and chemistry of proteins is a feature that is unique to this database, so far. The database can be used as a source of data to calibrate sequence search algorithms and for the generation of population statistics on protein structures. The database and its associated files are freely accessible from a number of WWW sites mirrored from URL http://scop. mrc-lmb.cam.ac.uk/scop/

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Year:  1999        PMID: 9847194      PMCID: PMC148149          DOI: 10.1093/nar/27.1.254

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  50 in total

1.  ProClass protein family database.

Authors:  H Huang; C Xiao; C H Wu
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The MetaFam Server: a comprehensive protein family resource.

Authors:  K A Silverstein; E Shoop; J E Johnson; A Kilian; J L Freeman; T M Kunau; I A Awad; M Mayer; E F Retzel
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.

Authors:  S Dietmann; J Park; C Notredame; A Heger; M Lappe; L Holm
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  iProClass: an integrated, comprehensive and annotated protein classification database.

Authors:  C H Wu; C Xiao; Z Hou; H Huang; W C Barker
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  A superfamily of archaeal, bacterial, and eukaryotic proteins homologous to animal transglutaminases.

Authors:  K S Makarova; L Aravind; E V Koonin
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

6.  Estimating the probability for a protein to have a new fold: A statistical computational model.

Authors:  E Portugaly; M Linial
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

7.  Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.

Authors:  Y Kuroda; K Tani; Y Matsuo; S Yokoyama
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

8.  Two tricks in one bundle: helix-turn-helix gains enzymatic activity.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

9.  Common fold in helix-hairpin-helix proteins.

Authors:  X Shao; N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

Review 10.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

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