Literature DB >> 9847192

INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects.

V V Solovyev1, A A Salamov.   

Abstract

INFOGENE is a database of known and predicted gene structures with descriptions of basic functional signals and gene components. It provides a possibility to create compilations of sequences with a given gene feature as well as to accumulate and analyze predicted genes in finished and unfinished sequences from genome sequencing projects. Protein sequence similarity searches in the database of predicted proteins is offered through the BLASTP program. INFOGENE is realized under the Sequence Retrieval System that provides useful links with the other informational databases. The database is available through the WWW server of the Computational Genomics Group at http://genomic.sanger.ac.uk/db.html

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Year:  1999        PMID: 9847192      PMCID: PMC148147          DOI: 10.1093/nar/27.1.248

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

Review 1.  Current methods of gene prediction, their strengths and weaknesses.

Authors:  Catherine Mathé; Marie-France Sagot; Thomas Schiex; Pierre Rouzé
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

2.  Complete genome sequence analysis of the Malacosoma neustria nucleopolyhedrovirus from Turkey.

Authors:  Donus Gencer; Remziye Nalcacioglu; Zihni Demirbag; Ismail Demir
Journal:  Virus Genes       Date:  2018-08-28       Impact factor: 2.332

3.  Ab initio gene finding in Drosophila genomic DNA.

Authors:  A A Salamov; V V Solovyev
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

4.  Analysis of canonical and non-canonical splice sites in mammalian genomes.

Authors:  M Burset; I A Seledtsov; V V Solovyev
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

5.  Genome sequencing and analysis of a granulovirus isolated from the Asiatic rice leafroller, Cnaphalocrocis medinalis.

Authors:  Shan Zhang; Zheng Zhu; Shifeng Sun; Qijin Chen; Fei Deng; Kai Yang
Journal:  Virol Sin       Date:  2015-12-18       Impact factor: 4.327

6.  Genome Characteristics of the Cyclophragma Undans Nucleopolyhedrovirus: A Distinct Species in Group I of Alphabaculovirus.

Authors:  Zheng Zhu; Jun Wang; Qianran Wang; Feifei Yin; Xiaoping Liu; Dianhai Hou; Lei Zhang; Haizhou Liu; Jiang Li; Basil M Arif; Hualin Wang; Fei Deng; Zhihong Hu; Manli Wang
Journal:  Virol Sin       Date:  2018-08-28       Impact factor: 4.327

7.  SpliceDB: database of canonical and non-canonical mammalian splice sites.

Authors:  M Burset; I A Seledtsov; V V Solovyev
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  Genomic sequence analysis of granulovirus isolated from the tobacco cutworm, Spodoptera litura.

Authors:  Yong Wang; Jae Young Choi; Jong Yul Roh; Qin Liu; Xue Ying Tao; Jong Bin Park; Jae Su Kim; Yeon Ho Je
Journal:  PLoS One       Date:  2011-11-23       Impact factor: 3.240

9.  The Complete Genome of a New Betabaculovirus from Clostera anastomosis.

Authors:  Feifei Yin; Zheng Zhu; Xiaoping Liu; Dianhai Hou; Jun Wang; Lei Zhang; Manli Wang; Zheng Kou; Hualin Wang; Fei Deng; Zhihong Hu
Journal:  PLoS One       Date:  2015-07-13       Impact factor: 3.240

10.  The discovery of phiAGATE, a novel phage infecting Bacillus pumilus, leads to new insights into the phylogeny of the subfamily Spounavirinae.

Authors:  Jakub Barylski; Grzegorz Nowicki; Anna Goździcka-Józefiak
Journal:  PLoS One       Date:  2014-01-23       Impact factor: 3.240

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