Literature DB >> 9847186

New features of the Blocks Database servers.

J G Henikoff1, S Henikoff, S Pietrokovski.   

Abstract

Blocks are ungapped multiple sequence alignments representing conserved protein regions, and the Blocks Database consists of blocks from documented protein families. World Wide Web (http://www. blocks.fhcrc.org) and Email (blocks@blocks.fhcrc.org) servers provide tools for homology searching and for analyzing protein family relationships. New enhancements include a multiple alignment processor that extends the use of these tools to imported multiple alignments of families not present in the database and a PCR primer designer that implements a new strategy for gene isolation.

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Year:  1999        PMID: 9847186      PMCID: PMC148141          DOI: 10.1093/nar/27.1.226

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Increased coverage of protein families with the blocks database servers.

Authors:  J G Henikoff; E A Greene; S Pietrokovski; S Henikoff
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  ProClass protein family database.

Authors:  H Huang; C Xiao; C H Wu
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  ProtoMap: automatic classification of protein sequences and hierarchy of protein families.

Authors:  G Yona; N Linial; M Linial
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

Authors:  T Gaasterland; A Sczyrba; E Thomas; G Aytekin-Kurban; P Gordon; C W Sensen
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

6.  DNA sequence-dependent folding determines the divergence in binding specificities between Maf and other bZIP proteins.

Authors:  M Dlakić; A V Grinberg; D A Leonard; T K Kerppola
Journal:  EMBO J       Date:  2001-02-15       Impact factor: 11.598

7.  Roles of the recJ and recN genes in homologous recombination and DNA repair pathways of Neisseria gonorrhoeae.

Authors:  Eric P Skaar; Matthew P Lazio; H Steven Seifert
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

8.  Characterization of bcsA mutations that bypass two distinct signaling requirements for Myxococcus xanthus development.

Authors:  John K Cusick; Elizabeth Hager; Ronald E Gill
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

9.  Heterochromatic deposition of centromeric histone H3-like proteins.

Authors:  S Henikoff; K Ahmad; J S Platero; B van Steensel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

10.  AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update.

Authors:  Dariusz Plewczynski; Adrian Tkacz; Lucjan S Wyrwicz; Leszek Rychlewski; Krzysztof Ginalski
Journal:  J Mol Model       Date:  2007-11-08       Impact factor: 1.810

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