Literature DB >> 9839941

Active site mutants of pyruvate decarboxylase from Zymomonas mobilis--a site-directed mutagenesis study of L112, I472, I476, E473, and N482.

M Pohl1, P Siegert, K Mesch, H Bruhn, J Grötzinger.   

Abstract

The homotetrameric pyruvate decarboxylase (PDC) from Zymomonas mobilis requires the cofactors thiamin diphosphate and Mg2+ for catalytic activity. We have investigated the role of various amino acid residues in the direct environment of the active site. The role of residue E473 in the catalytic activity and stability of the enzyme was probed by several mutations. All mutant enzymes were either inactive or failed to give any recombinant protein. The close interaction of E473 and N482, which can be deduced from the X-ray structure, has been probed by mutagenesis of N482 to D. This mutation has a significant influence especially on the carboligation reaction of PDC, whereas the binding of the cofactors and the thermostability were not affected. These data suggest a specific interaction of N482 and EA73 which is essential for coordinating the second aldehyde molecule during carboligation. Three hydrophobic residues (L112, I472 and I476) in the vicinity of the active centre have been investigated with respect to their potential influence on the transition states during catalysis. In contrast to L112, I472 and I476 influence the decarboxylation and carboligation reactions. The enlarged substrate-binding site of PDCI472A allows the decarboxylation of longer aliphatic 2-keto acids (C4-C6) as well as aromatic 2-keto acids besides pyruvate. Carboligations using PDCI472A as a catalyst yielded 2-hydroxypropiophenone, benzoin and phenylacetylcarbinol. The enantioselectivity of PAC formation is impaired by mutations of both I472 and I476. The stereochemistry is most significantly affected with the mutant enzyme PDCI476E, which catalyses predominantly the synthesis of (S)-phenylacetylcarbinol.

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Year:  1998        PMID: 9839941     DOI: 10.1046/j.1432-1327.1998.2570538.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  7 in total

1.  Aspartate-27 and glutamate-473 are involved in catalysis by Zymomonas mobilis pyruvate decarboxylase.

Authors:  A K Chang; P F Nixon; R G Duggleby
Journal:  Biochem J       Date:  1999-04-15       Impact factor: 3.857

2.  The pyruvate decarboxylase activity of IpdC is a limitation for isobutanol production by Klebsiella pneumoniae.

Authors:  Lin Shu; Jinjie Gu; Qinghui Wang; Shaoqi Sun; Youtian Cui; Jason Fell; Wai Shun Mak; Justin B Siegel; Jiping Shi; Gary J Lye; Frank Baganz; Jian Hao
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-05-02

3.  Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.

Authors:  Stijn Spaepen; Wim Versées; Dörte Gocke; Martina Pohl; Jan Steyaert; Jos Vanderleyden
Journal:  J Bacteriol       Date:  2007-08-31       Impact factor: 3.490

4.  Physiological relation between respiration activity and heterologous expression of selected benzoylformate decarboxylase variants in Escherichia coli.

Authors:  Thomas G Palmen; Jens Nieveler; Bettina Frölich; Wiltrud Treffenfeldt; Martina Pohl; Jochen Büchs
Journal:  Microb Cell Fact       Date:  2010-10-19       Impact factor: 5.328

5.  Structure of the ThDP-dependent enzyme benzaldehyde lyase refined to 1.65 A resolution.

Authors:  Andy Maraite; Thomas Schmidt; Marion B Ansörge-Schumacher; A Marek Brzozowski; Gideon Grogan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-06-15

6.  Expressed sequence tag analysis of khat (Catha edulis) provides a putative molecular biochemical basis for the biosynthesis of phenylpropylamino alkaloids.

Authors:  Jillian M Hagel; Raz Krizevski; Korey Kilpatrick; Yaron Sitrit; Frédéric Marsolais; Efraim Lewinsohn; Peter J Facchini
Journal:  Genet Mol Biol       Date:  2011-10-01       Impact factor: 1.771

7.  A standard numbering scheme for thiamine diphosphate-dependent decarboxylases.

Authors:  Constantin Vogel; Michael Widmann; Martina Pohl; Jürgen Pleiss
Journal:  BMC Biochem       Date:  2012-11-17       Impact factor: 4.059

  7 in total

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