Literature DB >> 9826686

A heterodimeric DNA polymerase: evidence that members of Euryarchaeota possess a distinct DNA polymerase.

I K Cann1, K Komori, H Toh, S Kanai, Y Ishino.   

Abstract

We describe here a DNA polymerase family highly conserved in Euryarchaeota, a subdomain of Archaea. The DNA polymerase is composed of two proteins, DP1 and DP2. Sequence analysis showed that considerable similarity exists between DP1 and the second subunit of eukaryotic DNA polymerase delta, a protein essential for the propagation of Eukarya, and that DP2 has conserved motifs found in proteins with nucleotide-polymerizing activity. These results, together with our previous biochemical analyses of one of the members, DNA polymerase II (DP1 + DP2) from Pyrococcus furiosus, implicate the DNA polymerases of this family in the DNA replication process of Euryarchaeota. The discovery of this DNA-polymerase family, aside from providing an opportunity to enhance our knowledge of the evolution of DNA polymerases, is a significant step toward the complete understanding of DNA replication across the three domains of life.

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Year:  1998        PMID: 9826686      PMCID: PMC24359          DOI: 10.1073/pnas.95.24.14250

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

Authors:  C R Woese; O Kandler; M L Wheelis
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

2.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

3.  Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors:  C R Woese; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

4.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

5.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

6.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

7.  The hyperthermophilic archaeon Pyrodictium occultum has two alpha-like DNA polymerases.

Authors:  T Uemori; Y Ishino; H Doi; I Kato
Journal:  J Bacteriol       Date:  1995-04       Impact factor: 3.490

8.  DNA polymerase III, a second essential DNA polymerase, is encoded by the S. cerevisiae CDC2 gene.

Authors:  K C Sitney; M E Budd; J L Campbell
Journal:  Cell       Date:  1989-02-24       Impact factor: 41.582

9.  Functions of replication factor C and proliferating-cell nuclear antigen: functional similarity of DNA polymerase accessory proteins from human cells and bacteriophage T4.

Authors:  T Tsurimoto; B Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

10.  Structure and function of the Saccharomyces cerevisiae CDC2 gene encoding the large subunit of DNA polymerase III.

Authors:  A Boulet; M Simon; G Faye; G A Bauer; P M Burgers
Journal:  EMBO J       Date:  1989-06       Impact factor: 11.598

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  55 in total

Review 1.  Archaebacteria then ... Archaes now (are there really no archaeal pathogens?).

Authors:  J N Reeve
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

Review 2.  Archaeal DNA replication: identifying the pieces to solve a puzzle.

Authors:  I K Cann; Y Ishino
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

3.  A Holliday junction resolvase from Pyrococcus furiosus: functional similarity to Escherichia coli RuvC provides evidence for conserved mechanism of homologous recombination in Bacteria, Eukarya, and Archaea.

Authors:  K Komori; S Sakae; H Shinagawa; K Morikawa; Y Ishino
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

4.  Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius.

Authors:  K P Hopfner; A Eichinger; R A Engh; F Laue; W Ankenbauer; R Huber; B Angerer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

5.  PCR performance of the B-type DNA polymerase from the thermophilic euryarchaeon Thermococcus aggregans improved by mutations in the Y-GG/A motif.

Authors:  K Böhlke; F M Pisani; C E Vorgias; B Frey; H Sobek; M Rossi; G Antranikian
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

6.  Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  I K Cann; S Ishino; M Yuasa; H Daiyasu; H Toh; Y Ishino
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

7.  A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity.

Authors:  Georg Lipps; Susanne Röther; Christina Hart; Gerhard Krauss
Journal:  EMBO J       Date:  2003-05-15       Impact factor: 11.598

8.  Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure.

Authors:  Sonoko Ishino; Takuji Oyama; Mihoko Yuasa; Kosuke Morikawa; Yoshizumi Ishino
Journal:  Extremophiles       Date:  2003-02-04       Impact factor: 2.395

9.  A 21-amino acid peptide from the cysteine cluster II of the family D DNA polymerase from Pyrococcus horikoshii stimulates its nuclease activity which is Mre11-like and prefers manganese ion as the cofactor.

Authors:  Yulong Shen; Xiao-Feng Tang; Hideshi Yokoyama; Eriko Matsui; Ikuo Matsui
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

10.  Characterization of the 3' exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D.

Authors:  Maarit Jokela; Anitta Eskelinen; Helmut Pospiech; Juha Rouvinen; Juhani E Syväoja
Journal:  Nucleic Acids Res       Date:  2004-04-30       Impact factor: 16.971

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