Literature DB >> 9826517

The single helix in protein L is largely disrupted at the rate-limiting step in folding.

D E Kim1, Q Yi, S T Gladwin, J M Goldberg, D Baker.   

Abstract

To investigate the role of helix formation in the folding of protein L, a 62 residue alpha/beta protein, we studied the consequences of both single and multiple mutations in the helix on the kinetics of folding. A triple mutant with 11 additional carbon atoms in core residues in the amino-terminal portion of the helix folded substantially faster than wild type, suggesting that hydrophobic association with residues elsewhere in the protein occurs at the rate-limiting step in folding. However, helix-destabilizing mutations had little effect on the rate of folding; in particular, a triple glycine substitution on the solvent-exposed side of the helix increased the unfolding rate 56-fold while reducing the folding rate less than threefold. Thus, in contrast to the predictions of models of folding involving the coalescence of well-formed secondary structure elements, the single helix in protein L appears to be largely disrupted at the rate-limiting step in folding and unfolding. Copyright 1998 Academic Press

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Year:  1998        PMID: 9826517     DOI: 10.1006/jmbi.1998.2200

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.

Authors:  L B Moran; J P Schneider; A Kentsis; G A Reddy; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

2.  Robustness of protein folding kinetics to surface hydrophobic substitutions.

Authors:  H Gu; N Doshi; D E Kim; K T Simons; J V Santiago; S Nauli; D Baker
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

3.  The origins of asymmetry in the folding transition states of protein L and protein G.

Authors:  John Karanicolas; Charles L Brooks
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

4.  A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.

Authors:  Ali T Shandiz; Michael C Baxa; Tobin R Sosnick
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

5.  Differences in the folding transition state of ubiquitin indicated by phi and psi analyses.

Authors:  Tobin R Sosnick; Robin S Dothager; Bryan A Krantz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-02       Impact factor: 11.205

6.  Early events in protein folding: Is there something more than hydrophobic burst?

Authors:  Carlo Camilloni; Ludovico Sutto; Davide Provasi; Guido Tiana; Ricardo A Broglia
Journal:  Protein Sci       Date:  2008-05-29       Impact factor: 6.725

7.  Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar.

Authors:  Michael C Baxa; Wookyung Yu; Aashish N Adhikari; Liang Ge; Zhen Xia; Ruhong Zhou; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

8.  A specific transition state for S-peptide combining with folded S-protein and then refolding.

Authors:  J M Goldberg; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

9.  Quantifying the structural requirements of the folding transition state of protein A and other systems.

Authors:  Michael C Baxa; Karl F Freed; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2008-07-01       Impact factor: 5.469

10.  Identification of a mechanical rheostat in the hydrophobic core of protein L.

Authors:  David P Sadler; Eva Petrik; Yukinori Taniguchi; James R Pullen; Masaru Kawakami; Sheena E Radford; David J Brockwell
Journal:  J Mol Biol       Date:  2009-08-13       Impact factor: 5.469

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