Literature DB >> 9818269

Validation of protein models derived from experiment.

R A Laskowski1, M W MacArthur, J M Thornton.   

Abstract

The growing number of protein structures solved at atomic resolution holds the promise of further improvements in geometry-based validation parameters. Additionally, the estimated standard uncertainties of the atomic coordinates have been computed for a number of X-ray structures, providing a measure of the coordinate precision. In NMR spectroscopy, a measure analogous to the crystallographic R-factor has been developed.

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Year:  1998        PMID: 9818269     DOI: 10.1016/s0959-440x(98)80156-5

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  55 in total

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2.  Crystal structure of the M-fragment of alpha-catenin: implications for modulation of cell adhesion.

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3.  NMR solution structure and topological orientation of monomeric phospholamban in dodecylphosphocholine micelles.

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4.  The 1.4 A resolution structure of Paracoccus pantotrophus pseudoazurin.

Authors:  Shabir Najmudin; Sofia R Pauleta; Isabel Moura; Maria J Romão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-25

5.  Engineering bifunctional laccase-xylanase chimeras for improved catalytic performance.

Authors:  Lucas F Ribeiro; Gilvan P Furtado; Marcos R Lourenzoni; Antonio J Costa-Filho; Camila R Santos; Simone C Peixoto Nogueira; Jorge A Betini; Maria de Lourdes T M Polizeli; Mario T Murakami; Richard J Ward
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6.  A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase.

Authors:  Lucia Banci; Ivano Bertini; Simone Ciofi-Baffoni; Efthalia Katsari; Nikolaos Katsaros; Karel Kubicek; Stefano Mangani
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7.  Chemically accurate protein structures: validation of protein NMR structures by comparison of measured and predicted pKa values.

Authors:  N Powers; Jan H Jensen
Journal:  J Biomol NMR       Date:  2006-06-03       Impact factor: 2.835

8.  Crystal structure of the SENP1 mutant C603S-SUMO complex reveals the hydrolytic mechanism of SUMO-specific protease.

Authors:  Zheng Xu; So Fun Chau; Kwok Ho Lam; Ho Yin Chan; Tzi Bun Ng; Shannon W N Au
Journal:  Biochem J       Date:  2006-09-15       Impact factor: 3.857

9.  Structure and dynamics of copper-free SOD: The protein before binding copper.

Authors:  Lucia Banci; Ivano Bertini; Francesca Cantini; Mariapina D'Onofrio; Maria Silvia Viezzoli
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

10.  Molecular models of protein targets from Mycobacterium tuberculosis.

Authors:  Nelson José Freitas da Silveira; Hugo Brandão Uchôa; José Henrique Pereira; Fernanda Canduri; Luiz Augusto Basso; Mário Sérgio Palma; Diógenes Santiago Santos; Walter Filgueira de Azevedo
Journal:  J Mol Model       Date:  2005-03-10       Impact factor: 1.810

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