Literature DB >> 9811876

Ribosomes can slide over and beyond "hungry" codons, resuming protein chain elongation many nucleotides downstream.

J A Gallant1, D Lindsley.   

Abstract

In cells subjected to moderate aminoacyl-tRNA limitation, the peptidyl-tRNA-ribosome complex stalled at the "hungry" codon can slide well beyond it on the messenger RNA and resume translation further downstream. This behavior is proved by unequivocal amino acid sequence data, showing a protein that lacks the bypassed sequence encoded between the hungry codon and specific landing sites. The landing sites are codons cognate to the anticodon of the peptidyl-tRNA. The efficiency of this behavior can be as high as 10-20% but declines with the length of the slide. Interposition of "trap" sites (nonproductive landing sites) in the bypassed region reduces the frequency of successful slides, confirming that the ribosome-peptidyl-tRNA complex passes through the untranslated region of the message. This behavior appears to be quite general: it can occur at the two kinds of hungry codons tested, AUA and AAG; the sliding peptidyl-tRNA can be any of three species tested, phenylalanine, tyrosine, or leucine tRNA; the peptidyl component can be either of two very different peptide sequences; and translation can resume at any of the three codons tested.

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Year:  1998        PMID: 9811876      PMCID: PMC24895          DOI: 10.1073/pnas.95.23.13771

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  Translational accuracy and the fitness of bacteria.

Authors:  C G Kurland
Journal:  Annu Rev Genet       Date:  1992       Impact factor: 16.830

2.  High concentrations of ppGpp decrease the RNA chain growth rate. Implications for protein synthesis and translational fidelity during amino acid starvation in Escherichia coli.

Authors:  M A Sørensen; K F Jensen; S Pedersen
Journal:  J Mol Biol       Date:  1994-02-18       Impact factor: 5.469

3.  On the mechanism of leftward frameshifting at several hungry codons.

Authors:  Z Barak; D Lindsley; J Gallant
Journal:  J Mol Biol       Date:  1996-03-08       Impact factor: 5.469

Review 4.  Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12.

Authors:  M De Felice; M Levinthal; M Iaccarino; J Guardiola
Journal:  Microbiol Rev       Date:  1979-03

5.  Ribosome mutants with altered accuracy translate with reduced processivity.

Authors:  H Dong; C G Kurland
Journal:  J Mol Biol       Date:  1995-05-05       Impact factor: 5.469

6.  Frameshifting in the expression of the E. coli trpR gene occurs by the bypassing of a segment of its coding sequence.

Authors:  I Benhar; H Engelberg-Kulka
Journal:  Cell       Date:  1993-01-15       Impact factor: 41.582

Review 7.  Regulatory implications of translational frameshifting in cellular gene expression.

Authors:  H Engelberg-Kulka; R Schoulaker-Schwarz
Journal:  Mol Microbiol       Date:  1994-01       Impact factor: 3.501

8.  In vivo role of the relA+ gene in regulation of the lac operon.

Authors:  P Primakoff
Journal:  J Bacteriol       Date:  1981-01       Impact factor: 3.490

9.  Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli.

Authors:  J F Kane; B N Violand; D F Curran; N R Staten; K L Duffin; G Bogosian
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

Review 10.  Translational errors during recombinant protein synthesis.

Authors:  R F Rosenberger
Journal:  Dev Biol Stand       Date:  1994
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  19 in total

1.  One protein from two open reading frames: mechanism of a 50 nt translational bypass.

Authors:  A J Herr; R F Gesteland; J F Atkins
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

2.  Mutations which alter the elbow region of tRNA2Gly reduce T4 gene 60 translational bypassing efficiency.

Authors:  A J Herr; J F Atkins; R F Gesteland
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

3.  Evidence that the bypassing ribosome travels through the coding gap.

Authors:  Jonathan Gallant; Paul Bonthuis; Dale Lindsley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-23       Impact factor: 11.205

4.  Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging.

Authors:  Dale Lindsley; Paul Bonthuis; Jonathan Gallant; Teodora Tofoleanu; Johan Elf; Måns Ehrenberg
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

5.  Inhibition of translation by consecutive rare leucine codons in E. coli: absence of effect of varying mRNA stability.

Authors:  Ping Shu; Huacheng Dai; Wenwu Gao; Emanuel Goldman
Journal:  Gene Expr       Date:  2006

6.  A model for the origin of protein synthesis as coreplicational scanning of nascent RNA.

Authors:  Alexander V Yakhnin
Journal:  Orig Life Evol Biosph       Date:  2007-09-20       Impact factor: 1.950

7.  Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA.

Authors:  Norma M Wills; Michelle O'Connor; Chad C Nelson; Charles C Rettberg; Wai Mun Huang; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2008-09-04       Impact factor: 11.598

8.  Secondary structure of bacteriophage T4 gene 60 mRNA: implications for translational bypassing.

Authors:  Gabrielle C Todd; Nils G Walter
Journal:  RNA       Date:  2013-03-14       Impact factor: 4.942

Review 9.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

10.  Efficient stimulation of site-specific ribosome frameshifting by antisense oligonucleotides.

Authors:  Michael T Howard; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

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