Literature DB >> 9797364

An alternatively spliced form of apobec-1 messenger RNA is overexpressed in human colon cancer.

R M Lee1, K Hirano, S Anant, D Baunoch, N O Davidson.   

Abstract

BACKGROUND & AIMS: Apobec-1 is an RNA-specific cytidine deaminase whose forced overexpression in transgenic animals is associated with hepatic carcinogenesis. Apobec-1 messenger RNA (mRNA) undergoes alternative splicing, generating a catalytically inactive peptide, apobec-T. We have examined apobec-1 gene expression in human gastrointestinal tumors and in colon cancer-derived cell lines.
METHODS: Levels of the full-length (apobec-1) and alternatively spliced (apobec-T) mRNAs were measured by RNase protection assay, and apobec-T distribution was determined by immunocytochemical localization.
RESULTS: Apobec-1 mRNA was detectable in normal and colon cancer tissue, metastatic nodules, and certain colon cancer-derived cell lines. Apobec-T mRNA abundance was increased an average of 3.5-fold in colon cancers compared with paired control tissue (range, 0.5-14-fold). Immunocytochemical analysis showed apobec-T expression in normal fetal and adult colon and in gastric and small intestinal adenocarcinomas, colonic tubular adenomas, and both primary and metastatic colonic tumors. Overexpression of apobec-T in a tetracycline-responsive cell line decreased cellular proliferation.
CONCLUSIONS: Apobec-T is expressed in normal, adenomatous, and cancerous gastrointestinal tissues, and levels of the mRNA encoding this peptide are significantly increased in colon cancer. Although its relationship to colon carcinogenesis has not been defined, the regulated overexpression of apobec-T is associated with an altered growth phenotype.

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Year:  1998        PMID: 9797364     DOI: 10.1016/s0016-5085(98)70080-0

Source DB:  PubMed          Journal:  Gastroenterology        ISSN: 0016-5085            Impact factor:   22.682


  10 in total

1.  An AU-rich sequence element (UUUN[A/U]U) downstream of the edited C in apolipoprotein B mRNA is a high-affinity binding site for Apobec-1: binding of Apobec-1 to this motif in the 3' untranslated region of c-myc increases mRNA stability.

Authors:  S Anant; N O Davidson
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

2.  C-->U editing of neurofibromatosis 1 mRNA occurs in tumors that express both the type II transcript and apobec-1, the catalytic subunit of the apolipoprotein B mRNA-editing enzyme.

Authors:  Debnath Mukhopadhyay; Shrikant Anant; Robert M Lee; Susan Kennedy; David Viskochil; Nicholas O Davidson
Journal:  Am J Hum Genet       Date:  2001-11-27       Impact factor: 11.025

3.  Alternative splicing of the rat sodium/bile acid transporter changes its cellular localization and transport properties.

Authors:  K N Lazaridis; P Tietz; T Wu; S Kip; P A Dawson; N F LaRusso
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

4.  Global DNA hypomethylation of colorectal tumours detected in tissue and liquid biopsies may be related to decreased methyl-donor content.

Authors:  Krisztina A Szigeti; Alexandra Kalmár; Orsolya Galamb; Gábor Valcz; Barbara K Barták; Zsófia B Nagy; Sára Zsigrai; Ildikó Felletár; Árpád V Patai; Tamás Micsik; Márton Papp; Eszter Márkus; Zsolt Tulassay; Peter Igaz; István Takács; Béla Molnár
Journal:  BMC Cancer       Date:  2022-06-02       Impact factor: 4.638

5.  Incorporating alternative splicing and mRNA editing into the genetic analysis of complex traits.

Authors:  Musa A Hassan; Jeroen P J Saeij
Journal:  Bioessays       Date:  2014-08-29       Impact factor: 4.345

Review 6.  The multifaceted roles of RNA binding in APOBEC cytidine deaminase functions.

Authors:  Kimberly M Prohaska; Ryan P Bennett; Jason D Salter; Harold C Smith
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-03-24       Impact factor: 9.957

7.  Editing of hnRNP K protein mRNA in colorectal adenocarcinoma and surrounding mucosa.

Authors:  K Klimek-Tomczak; M Mikula; A Dzwonek; A Paziewska; J Karczmarski; E Hennig; J M Bujnicki; P Bragoszewski; O Denisenko; K Bomsztyk; J Ostrowski
Journal:  Br J Cancer       Date:  2006-02-27       Impact factor: 7.640

8.  Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution.

Authors:  Jeremy Ratcliff; Peter Simmonds
Journal:  Virology       Date:  2021-01-07       Impact factor: 3.616

9.  Molecular correlates of immune cytolytic subgroups in colorectal cancer by integrated genomics analysis.

Authors:  Constantinos Roufas; Ilias Georgakopoulos-Soares; Apostolos Zaravinos
Journal:  NAR Cancer       Date:  2021-03-02

10.  The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages.

Authors:  Musa A Hassan; Vincent Butty; Kirk D C Jensen; Jeroen P J Saeij
Journal:  Genome Res       Date:  2013-11-18       Impact factor: 9.043

  10 in total

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