Literature DB >> 9787640

Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena.

M G Munteanu1, K Vlahovicek, S Parthasarathy, I Simon, S Pongor.   

Abstract

Local bending phenomena can be predicted by elastic models that incorporate sequence-dependent anisotropic-bendability (SDAB). SDAB models consider DNA to be an initially straight, segmented, elastic rod, in which the flexibility of each segment is greater towards the major groove than it is in other directions. While local bending can be predicted by static-geometry models as well, SDAB models, in addition, qualitatively explain such phenomena as the affinity of protein binding and kinking. A set of prediction tools is available at http:/(/)www.icgeb.trieste.it/dna.

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Year:  1998        PMID: 9787640     DOI: 10.1016/s0968-0004(98)01265-1

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  52 in total

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