Literature DB >> 9778346

The preference of tryptophan for membrane interfaces.

W M Yau1, W C Wimley, K Gawrisch, S H White.   

Abstract

One of the ubiquitous features of membrane proteins is the preference of tryptophan and tyrosine residues for membrane surfaces that presumably arises from enhanced stability due to distinct interfacial interactions. The physical basis for this preference is widely believed to arise from amphipathic interactions related to imino group hydrogen bonding and/or dipole interactions. We have examined these and other possibilities for tryptophan's interfacial preference by using 1H magic angle spinning (MAS) chemical shift measurements, two-dimensional (2D) nuclear Overhauser effect spectroscopy (2D-NOESY) 1H MAS NMR, and solid state 2H NMR to study the interactions of four tryptophan analogues with phosphatidylcholine membranes. We find that the analogues reside in the vicinity of the glycerol group where they all cause similar modest changes in acyl chain organization and that hydrocarbon penetration was not increased by reduction of hydrogen bonding or electric dipole interaction ability. These observations rule out simple amphipathic or dipolar interactions as the physical basis for the interfacial preference. More likely, the preference is dominated by tryptophan's flat rigid shape that limits access to the hydrocarbon core and its pi electronic structure and associated quadrupolar moment (aromaticity) that favor residing in the electrostatically complex interface environment.

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Year:  1998        PMID: 9778346     DOI: 10.1021/bi980809c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  305 in total

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3.  Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel.

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4.  Structure and dynamics of K channel pore-lining helices: a comparative simulation study.

Authors:  I H Shrivastava; C E Capener; L R Forrest; M S Sansom
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

5.  pH-dependent tetramerization and amantadine binding of the transmembrane helix of M2 from the influenza A virus.

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7.  Filter flexibility in a mammalian K channel: models and simulations of Kir6.2 mutants.

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8.  Partitioning and localization of environment-sensitive 2-(2'-pyridyl)- and 2-(2'-pyrimidyl)-indoles in lipid membranes: a joint refinement using fluorescence measurements and molecular dynamics simulations.

Authors:  Alexander Kyrychenko; Feiyue Wu; Randolph P Thummel; Jacek Waluk; Alexey S Ladokhin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

9.  Membrane protein dynamics in different environments: simulation study of the outer membrane protein X in a lipid bilayer and in a micelle.

Authors:  Alexandra Choutko; Alice Glättli; César Fernández; Christian Hilty; Kurt Wüthrich; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2010-10-05       Impact factor: 1.733

10.  Determinants of Endoplasmic Reticulum-to-Lipid Droplet Protein Targeting.

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Journal:  Dev Cell       Date:  2020-07-29       Impact factor: 12.270

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