Literature DB >> 9765257

Bacteriophage T7 DNA helicase binds dTTP, forms hexamers, and binds DNA in the absence of Mg2+. The presence of dTTP is sufficient for hexamer formation and DNA binding.

K M Picha1, S S Patel.   

Abstract

The role of Mg2+ in dTTP hydrolysis, dTTP binding, hexamer formation, and DNA binding was studied in bacteriophage T7 DNA helicase (4A' protein). The steady state kcat for the dTTPase activity was 200-300-fold lower in the absence of MgCl2, but the Km was only slightly affected. Direct dTTP binding experiments showed that the Kd of dTTP was unaffected, but the stoichiometry of dTTP binding was different in the absence of Mg2+. Two dTTPs were found to bind tightly in the absence of Mg2+ in contrast to three to four in the presence of Mg2+. In the presence of DNA there was little difference in the stoichiometry of dTTP binding to 4A'. These results indicate that Mg2+ is not necessary for dTTP binding, but Mg2+ is required for optimal hydrolysis of dTTP. Gel filtration of 4A' in the presence of dTTP without Mg2+ showed that Mg2+ was not necessary, and dTTP was sufficient for hexamer formation. The hexamers formed in the presence of dTTP without Mg2+ were capable of binding single-stranded DNA. However, the 4A' hexamers formed in the presence of dTDP with or without Mg2+ did not bind DNA, indicating that hexamer formation itself is not sufficient for DNA binding. The hexamers need to be in the correct conformation, in this case in the dTTP-bound state, to interact with the DNA. Thus, the gamma-phosphate of dTTP plays an important role in causing a conformational change in the protein that leads to stable interactions of 4A' with the DNA.

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Year:  1998        PMID: 9765257     DOI: 10.1074/jbc.273.42.27315

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  24 in total

1.  A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

Authors:  P Ahnert; K M Picha; S S Patel
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

2.  A superfamily 3 DNA helicase encoded by plasmid pSSVi from the hyperthermophilic archaeon Sulfolobus solfataricus unwinds DNA as a higher-order oligomer and interacts with host primase.

Authors:  Xin Guo; Li Huang
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

Review 3.  Isothermal DNA amplification in vitro: the helicase-dependent amplification system.

Authors:  Yong-Joo Jeong; Kkothanahreum Park; Dong-Eun Kim
Journal:  Cell Mol Life Sci       Date:  2009-07-24       Impact factor: 9.261

4.  Coupling of DNA unwinding to nucleotide hydrolysis in a ring-shaped helicase.

Authors:  Ilker Donmez; Smita S Patel
Journal:  EMBO J       Date:  2008-05-22       Impact factor: 11.598

5.  Branch migration enzyme as a Brownian ratchet.

Authors:  Ivan Rasnik; Yong-Joo Jeong; Sean A McKinney; Vaishnavi Rajagopal; Smita S Patel; Taekjip Ha
Journal:  EMBO J       Date:  2008-05-29       Impact factor: 11.598

6.  Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7.

Authors:  Ajit K Satapathy; Arkadiusz W Kulczyk; Sharmistha Ghosh; Antoine M van Oijen; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-08-12       Impact factor: 5.157

7.  Human mitochondrial DNA helicase TWINKLE is both an unwinding and annealing helicase.

Authors:  Doyel Sen; Divya Nandakumar; Guo-Qing Tang; Smita S Patel
Journal:  J Biol Chem       Date:  2012-03-01       Impact factor: 5.157

8.  The glutamate switch of bacteriophage T7 DNA helicase: role in coupling nucleotide triphosphate (NTP) and DNA binding to NTP hydrolysis.

Authors:  Ajit K Satapathy; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

9.  Site-directed mutagenesis reveals roles for conserved amino acid residues in the hexameric DNA helicase DnaB from Bacillus stearothermophilus.

Authors:  P Soultanas; D B Wigley
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

10.  The arginine finger of bacteriophage T7 gene 4 helicase: role in energy coupling.

Authors:  Donald J Crampton; Shenyuan Guo; Donald E Johnson; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-30       Impact factor: 11.205

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