Literature DB >> 9761897

1.2 A refinement of the Kunitz-type domain from the alpha3 chain of human type VI collagen.

K Merigeau1, B Arnoux, D Perahia, K Norris, F Norris, A Ducruix.   

Abstract

The recombinant Kunitz-type domain (C5) of human collagen alpha3(VI) chain was previously described at 1.6 A resolution at room temperature. By changing the crystallization conditions and using synchrotron radiation, we are able to record diffraction data to 1.2 A resolution for crystals of the same space group at 291 K. The protein-water-ion model has been refined anisotropically against these new data using the program SHELXL93; the results converged to an R factor of 15.0%, with all data between 7 and 1.2 A. The final electron-density map reveals a clear chain tracing with a few disordered residues and five residues out of 58 that present alternate conformations. The Cys14-Cys38 bond presents the less frequently observed left-hand conformation (chi1 = -60 degrees). The solvent molecules and a phosphate ion are well ordered with an average B of 38 A2. The high-resolution structure reveals the N and C termini which were missing from the 1.6 A structure.

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Year:  1998        PMID: 9761897     DOI: 10.1107/s0907444997010846

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  2 in total

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Authors:  Jérôme Tubiana; Simona Cocco; Rémi Monasson
Journal:  Elife       Date:  2019-03-12       Impact factor: 8.140

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Authors:  Sandra Macedo-Ribeiro; Carla Almeida; Bárbara M Calisto; Thomas Friedrich; Reinhard Mentele; Jörg Stürzebecher; Pablo Fuentes-Prior; Pedro José Barbosa Pereira
Journal:  PLoS One       Date:  2008-02-20       Impact factor: 3.240

  2 in total

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