Literature DB >> 9761820

Crystallization and structure solution of p53 (residues 326-356) by molecular replacement using an NMR model as template.

P R Mittl1, P Chène, M G Grütter.   

Abstract

The molecular replacement method is a powerful technique for crystal structure solution but the use of NMR structures as templates often causes problems. In this work the NMR structure of the p53 tetramerization domain has been used to solve the crystal structure by molecular replacement. Since the rotation- and translation-functions were not sufficiently clear, additional information about the symmetry of the crystal and the protein complex was used to identify correct solutions. The three-dimensional structure of residues 326-356 was subsequently refined to a final R factor of 19.1% at 1.5 A resolution.

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Year:  1998        PMID: 9761820     DOI: 10.1107/s0907444997006550

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  25 in total

Review 1.  Utilizing NMR to study the structure of growth-inhibitory proteins.

Authors:  Francesca Marassi
Journal:  Methods Mol Biol       Date:  2003

2.  Planck-Benzinger thermal work function: thermodynamic characterization of the carboxy-terminus of p53 peptide fragments.

Authors:  Paul W Chun; Marc S Lewis
Journal:  Protein J       Date:  2010-11       Impact factor: 2.371

3.  Factors influencing protein tyrosine nitration--structure-based predictive models.

Authors:  Alexander S Bayden; Vasily A Yakovlev; Paul R Graves; Ross B Mikkelsen; Glen E Kellogg
Journal:  Free Radic Biol Med       Date:  2010-12-21       Impact factor: 7.376

4.  Quaternary structure of p53: the light at the end of the tunnel.

Authors:  Zippora Shakked
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-18       Impact factor: 11.205

5.  Structural evolution of p53, p63, and p73: implication for heterotetramer formation.

Authors:  Andreas C Joerger; Sridharan Rajagopalan; Eviatar Natan; Dmitry B Veprintsev; Carol V Robinson; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-07       Impact factor: 11.205

6.  Multi-scale ensemble modeling of modular proteins with intrinsically disordered linker regions: application to p53.

Authors:  Tsuyoshi Terakawa; Junichi Higo; Shoji Takada
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

7.  CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain.

Authors:  H Poulsen; J Nilsson; C K Damgaard; J Egebjerg; J Kjems
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

8.  Intrinsically disordered regions of p53 family are highly diversified in evolution.

Authors:  Bin Xue; Celeste J Brown; A Keith Dunker; Vladimir N Uversky
Journal:  Biochim Biophys Acta       Date:  2013-01-22

9.  Conformational detection of p53's oligomeric state by FlAsH Fluorescence.

Authors:  Tawnya M Webber; Andrew C Allen; Wai Kit Ma; Rhett G Molloy; Charisse N Kettelkamp; Caitlin A Dow; Matthew J Gage
Journal:  Biochem Biophys Res Commun       Date:  2009-04-23       Impact factor: 3.575

10.  Stability and structural recovery of the tetramerization domain of p53-R337H mutant induced by a designed templating ligand.

Authors:  Susana Gordo; Vera Martos; Eva Santos; Margarita Menéndez; Carles Bo; Ernest Giralt; Javier de Mendoza
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-21       Impact factor: 11.205

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