Literature DB >> 9757135

Structure of pig plasma retinol-binding protein at 1.65 A resolution.

G Zanotti1, M Panzalorto, A Marcato, G Malpeli, C Folli, R Berni.   

Abstract

The crystal structure of pig plasma retinol-binding protein (RBP) has been determined at 1.65 A resolution. The space group is P212121, with a = 45.81 (4), b = 53.14 (5), c = 72.97 (8) A and one protein molecule in the asymmetric unit. The structure has been solved using the molecular replacement method and refined with restrained least squares to an R factor of 0.1844 and an Rfree of 0.237 for 18 874 and 1001 independent reflections, respectively. The relatively high resolution structure of pig holoRBP has revealed some new structural details. Moreover, it has provided a description of the binding site for Cd2+, a metal ion which is required for protein crystallization. The hepta-coordination of the RBP-bound cadmium ion involves different residues of two symmetry-related RBP molecules, consistent with the participation of the cation in intermolecular interactions that in turn promote protein crystallization.

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Year:  1998        PMID: 9757135     DOI: 10.1107/s0907444998002303

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  Anisotropy of fluctuation dynamics of proteins with an elastic network model.

Authors:  A R Atilgan; S R Durell; R L Jernigan; M C Demirel; O Keskin; I Bahar
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  How to describe protein motion without amino acid sequence and atomic coordinates.

Authors:  Dengming Ming; Yifei Kong; Maxime A Lambert; Zhong Huang; Jianpeng Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-25       Impact factor: 11.205

3.  A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps.

Authors:  Yifei Kong; Xing Zhang; Timothy S Baker; Jianpeng Ma
Journal:  J Mol Biol       Date:  2004-05-21       Impact factor: 5.469

4.  Steered molecular dynamics simulations of ligand-receptor interaction in lipocalins.

Authors:  Janne Kalikka; Jaakko Akola
Journal:  Eur Biophys J       Date:  2010-11-13       Impact factor: 1.733

5.  Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.

Authors:  Tsutomu Nakamura; Mayumi Niiyama; Wakana Hashimoto; Kurumi Ida; Manabu Abe; Junji Morita; Koichi Uegaki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-20       Impact factor: 1.056

6.  ProteinShader: illustrative rendering of macromolecules.

Authors:  Joseph R Weber
Journal:  BMC Struct Biol       Date:  2009-03-30

7.  Distantly related lipocalins share two conserved clusters of hydrophobic residues: use in homology modeling.

Authors:  Benoit Adam; Benoit Charloteaux; Jerome Beaufays; Luc Vanhamme; Edmond Godfroid; Robert Brasseur; Laurence Lins
Journal:  BMC Struct Biol       Date:  2008-01-11
  7 in total

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