Literature DB >> 9753475

On the mechanism and specificity of soluble, quinoprotein glucose dehydrogenase in the oxidation of aldose sugars.

A J Olsthoorn1, J A Duine.   

Abstract

Kinetic and optical studies were performed on the reductive half-reaction of soluble, quinoprotein glucose dehydrogenase (sGDH), i.e., on the conversion of sGDHox plus aldose sugar into sGDHred plus corresponding aldonolactone. It appears that the nature and stereochemical configuration of the substituents at certain positions in the aldose molecule determine the substrate specificity pattern: absolute specificity exists with respect to the C1-position (only sugars being oxidized which have the same configuration of the H/OH substituents at this site as the beta-anomer of glucose, not those with the opposite one) and with respect to the overall conformation of the sugar molecule (sugars with a 4C1 chair conformation are substrates, those with a 1C4 one are not); the nature and configuration of the substituents at the 3-position are hardly relevant for activity, and an equatorial pyranose group at the 4-position exhibits only aspecific hindering of the binding of the aldose moiety of a disaccharide. The pH optimum determined for glucose oxidation appeared to be 7.0, implying that reoxidation of sGDHred is rate-limiting with those electron acceptors displaying a different value under steady-state conditions. The kinetic mechanism of sGDH consists of (a) step(s) in which a fluorescing intermediate is formed, and a subsequent, irreversible step, determining the overall rate of the reductive half-reaction. The consequences of this for the likeliness of chemical mechanisms where glucose is oxidized by covalent catalysis in which a C5-adduct of glucose and PQQ are involved, or by hydride transfer from glucose to PQQ, followed by tautomerization of C5-reduced PQQ to PQQH2, are discussed. The negative cooperative behavior of sGDH seems to be due to substrate-occupation-dependent subunit interaction in the dimeric enzyme molecule, leading to a large increase of the turnover rate under saturating conditions.

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Year:  1998        PMID: 9753475     DOI: 10.1021/bi9808868

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

Review 1.  Structural requirements of pyrroloquinoline quinone dependent enzymatic reactions.

Authors:  A Oubrie; B W Dijkstra
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

2.  Catalytic and molecular properties of the quinohemoprotein tetrahydrofurfuryl alcohol dehydrogenase from Ralstonia eutropha strain Bo.

Authors:  G Zarnt; T Schräder; J R Andreesen
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

3.  Active-site structure of the soluble quinoprotein glucose dehydrogenase complexed with methylhydrazine: a covalent cofactor-inhibitor complex.

Authors:  A Oubrie; H J Rozeboom; B W Dijkstra
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

Review 4.  Determination of enzyme mechanisms by molecular dynamics: studies on quinoproteins, methanol dehydrogenase, and soluble glucose dehydrogenase.

Authors:  Swarnalatha Y Reddy; Thomas C Bruice
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

5.  Catalytic mechanism of quinoprotein methanol dehydrogenase: A theoretical and x-ray crystallographic investigation.

Authors:  Y J Zheng; F S Mathews; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

6.  Crystallization of quinoprotein glucose dehydrogenase variants and homologues by microseeding.

Authors:  Juan Sanchez-Weatherby; Stacey Southall; Arthur Oubrie
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-05

7.  Characterization of a novel PQQ-dependent quinohemoprotein pyranose dehydrogenase from Coprinopsis cinerea classified into auxiliary activities family 12 in carbohydrate-active enzymes.

Authors:  Kouta Takeda; Hirotoshi Matsumura; Takuya Ishida; Masahiro Samejima; Hiroyuki Ohno; Makoto Yoshida; Kiyohiko Igarashi; Nobuhumi Nakamura
Journal:  PLoS One       Date:  2015-02-13       Impact factor: 3.240

8.  Similar but Not the Same: First Kinetic and Structural Analyses of a Methanol Dehydrogenase Containing a Europium Ion in the Active Site.

Authors:  Bérénice Jahn; Arjan Pol; Henning Lumpe; Thomas R M Barends; Andreas Dietl; Carmen Hogendoorn; Huub J M Op den Camp; Lena J Daumann
Journal:  Chembiochem       Date:  2018-03-11       Impact factor: 3.164

9.  Mechanism of Reconstitution/Activation of the Soluble PQQ-Dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus: A Comprehensive Study.

Authors:  Claire Stines-Chaumeil; François Mavré; Brice Kauffmann; Nicolas Mano; Benoît Limoges
Journal:  ACS Omega       Date:  2020-01-23

10.  Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization.

Authors:  Annick Turbe-Doan; Eric Record; Vincent Lombard; Rajender Kumar; Anthony Levasseur; Bernard Henrissat; Marie-Line Garron
Journal:  Appl Environ Microbiol       Date:  2019-11-27       Impact factor: 4.792

  10 in total

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