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Literature DB >> 9751694

Native secondary structure formation in RNA may be a slave to tertiary folding.

D Thirumalai¹.

Abstract

Mesh：

Substances：

Year: 1998 PMID： 9751694 PMCID： PMC33899 DOI： 10.1073/pnas.95.20.11506

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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18 in total

1. RNA folding causes secondary structure rearrangement.

Authors: M Wu; I Tinoco
Journal: Proc Natl Acad Sci U S A Date: 1998-09-29 Impact factor: 11.205

Review 2. Strategies for RNA folding.

Authors: D E Draper
Journal: Trends Biochem Sci Date: 1996-04 Impact factor: 13.807

3. Folding funnels and energy landscapes of larger proteins within the capillarity approximation.

Authors: P G Wolynes
Journal: Proc Natl Acad Sci U S A Date: 1997-06-10 Impact factor: 11.205

4. A magnesium ion core at the heart of a ribozyme domain.

Authors: J H Cate; R L Hanna; J A Doudna
Journal: Nat Struct Biol Date: 1997-07

Review 5. Submillisecond kinetics of protein folding.

Authors: W A Eaton; V Muñoz; P A Thompson; C K Chan; J Hofrichter
Journal: Curr Opin Struct Biol Date: 1997-02 Impact factor: 6.809

6. Protein folding funnels: the nature of the transition state ensemble.

Authors: J N Onuchic; N D Socci; Z Luthey-Schulten; P G Wolynes
Journal: Fold Des Date: 1996

7. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding.

Authors: P P Zarrinkar; J R Williamson
Journal: Nat Struct Biol Date: 1996-05

8. Crystal structure of a group I ribozyme domain: principles of RNA packing.

Authors: J H Cate; A R Gooding; E Podell; K Zhou; B L Golden; C E Kundrot; T R Cech; J A Doudna
Journal: Science Date: 1996-09-20 Impact factor: 47.728

9. RNA tertiary structure mediation by adenosine platforms.

Authors: J H Cate; A R Gooding; E Podell; K Zhou; B L Golden; A A Szewczak; C E Kundrot; T R Cech; J A Doudna
Journal: Science Date: 1996-09-20 Impact factor: 47.728

10. Visualizing the higher order folding of a catalytic RNA molecule.

Authors: D W Celander; T R Cech
Journal: Science Date: 1991-01-25 Impact factor: 47.728

18 in total

1. RNA folding energy landscapes.

Authors: S J Chen; K A Dill
Journal: Proc Natl Acad Sci U S A Date: 2000-01-18 Impact factor: 11.205

2. RNA hairpin-folding kinetics.

Authors: Wenbing Zhang; Shi-Jie Chen
Journal: Proc Natl Acad Sci U S A Date: 2002-02-12 Impact factor: 11.205

3. Characterization of the initiation sites of both polarity strands of a viroid RNA reveals a motif conserved in sequence and structure.

Authors: J A Navarro; R Flores
Journal: EMBO J Date: 2000-06-01 Impact factor: 11.598

Native secondary structure formation in RNA may be a slave to tertiary folding.

1. RNA folding causes secondary structure rearrangement.

Review 2. Strategies for RNA folding.

3. Folding funnels and energy landscapes of larger proteins within the capillarity approximation.

4. A magnesium ion core at the heart of a ribozyme domain.

Review 5. Submillisecond kinetics of protein folding.

6. Protein folding funnels: the nature of the transition state ensemble.

7. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding.

8. Crystal structure of a group I ribozyme domain: principles of RNA packing.

9. RNA tertiary structure mediation by adenosine platforms.

10. Visualizing the higher order folding of a catalytic RNA molecule.

1. RNA folding energy landscapes.

2. RNA hairpin-folding kinetics.

3. Characterization of the initiation sites of both polarity strands of a viroid RNA reveals a motif conserved in sequence and structure.

4. Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations.

5. Predicting RNA folding thermodynamics with a reduced chain representation model.

6. Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures.

7. Salt contribution to RNA tertiary structure folding stability.

8. Modeling Loop Composition and Ion Concentration Effects in RNA Hairpin Folding Stability.

9. Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures.

10. Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.