Literature DB >> 9730832

Oxidative decarboxylation of 6-phosphogluconate by 6-phosphogluconate dehydrogenase proceeds by a stepwise mechanism with NADP and APADP as oxidants.

C C Hwang1, A J Berdis, W E Karsten, W W Cleland, P F Cook.   

Abstract

Primary kinetic deuterium, 13C, and multiple deuterium/13C-isotope effects on V/K6PG have been measured for the Candida utilis (cu) and sheep liver (sl) 6-phosphogluconate dehydrogenases (6PGDH). With NADP as the dinucleotide substrate, the following values of D(V/K6PG), 13(V/K6PG)H, and 13(V/K6PG)D were measured at pH 8 for cu6PGDH (sl6PGDH): 1.57 +/- 0.08 (1.87 +/- 0.10), 1.0209 +/- 0.0005 (1.0059 +/- 0.000 10), 1.0158 +/- 0.0001 (1.0036 +/- 0.0008). With APADP as the dinucleotide substrate, values for the above isotope effects at pH 8 are as follows: 2.98 +/- 0.08 (2.47 +/- 0.06), 1. 0106 +/- 0.0002 (1.0086 +/- 0.000 09), and 0.9934 +/- 0.0003 (0.9950 +/- 0.0003). Results indicate the oxidative decarboxylation of 6PG to the 1,2-enediol of ribulose 5-phosphate proceeds via a stepwise mechanism with hydride transfer preceding decarboxylation in all cases. The inverse 13C-isotope effect observed with APADP and 6PG-3d may reflect a preequlibrium isotope effect on the binding of 6PG preceding hydride transfer. Deuterium-isotope effects on V, V/KNADP, and V/K6PG are identical at all pHs and for both enzymes. The primary deuterium-isotope effect on V/K6PG for both enzymes is constant at pH values below the pK in the pH profile for V/K6PG, and decreases as the pH increases. Data suggest the development of rate limitation by a step or steps other than the hydride-transfer step as the pH is increased.

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Year:  1998        PMID: 9730832     DOI: 10.1021/bi980611s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  6-Phosphogluconate dehydrogenase mechanism: evidence for allosteric modulation by substrate.

Authors:  Stefania Hanau; Katy Montin; Carlo Cervellati; Morena Magnani; Franco Dallocchio
Journal:  J Biol Chem       Date:  2010-05-07       Impact factor: 5.157

2.  Crystal structures of a bacterial 6-phosphogluconate dehydrogenase reveal aspects of specificity, mechanism and mode of inhibition by analogues of high-energy reaction intermediates.

Authors:  Ramasubramanian Sundaramoorthy; Jorge Iulek; Michael P Barrett; Olivier Bidet; Gian Filippo Ruda; Ian H Gilbert; William N Hunter
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3.  Nonstatistical 13C distribution during carbon transfer from glucose to ethanol during fermentation is determined by the catabolic pathway exploited.

Authors:  Kevin Bayle; Serge Akoka; Gérald S Remaud; Richard J Robins
Journal:  J Biol Chem       Date:  2014-12-23       Impact factor: 5.157

Review 4.  Intramolecular, compound-specific, and bulk carbon isotope patterns in C3 and C4 plants: a review and synthesis.

Authors:  Erik A Hobbie; Roland A Werner
Journal:  New Phytol       Date:  2004-02       Impact factor: 10.151

5.  Kinetic isotope effects significantly influence intracellular metabolite (13) C labeling patterns and flux determination.

Authors:  Thomas M Wasylenko; Gregory Stephanopoulos
Journal:  Biotechnol J       Date:  2013-08-05       Impact factor: 4.677

6.  On the role of Brønsted catalysis in Pseudomonas fluorescens mannitol 2-dehydrogenase.

Authors:  Mario Klimacek; Kathryn L Kavanagh; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2003-10-01       Impact factor: 3.857

7.  The rate of lactate production from glucose in hearts is not altered by per-deuteration of glucose.

Authors:  Alexander M Funk; Brian L Anderson; Xiaodong Wen; Thomas Hever; Chalermchai Khemtong; Zoltan Kovacs; A Dean Sherry; Craig R Malloy
Journal:  J Magn Reson       Date:  2017-09-18       Impact factor: 2.229

8.  Proteomic investigation into betulinic acid-induced apoptosis of human cervical cancer HeLa cells.

Authors:  Tao Xu; Qiuying Pang; Dong Zhou; Aiqin Zhang; Shaman Luo; Yang Wang; Xiufeng Yan
Journal:  PLoS One       Date:  2014-08-22       Impact factor: 3.240

Review 9.  6-Phosphogluconate dehydrogenase and its crystal structures.

Authors:  Stefania Hanau; John R Helliwell
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-02-23       Impact factor: 1.056

  9 in total

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