Literature DB >> 9725618

Chameleon sequences in the PDB.

M Mezei1.   

Abstract

The Brookhaven Protein Data Bank has been searched for sequences that can be found both in helix and sheet conformation. The longest such sequences consist of seven residues.

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Year:  1998        PMID： 9725618     DOI： 10.1093/protein/11.6.411

Source DB:  PubMed          Journal:  Protein Eng        ISSN： 0269-2139


  34 in total

1.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Understanding the sequence determinants of conformational switching using protein design.

Authors:  S Dalal; L Regan
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

3.  On the properties and sequence context of structurally ambivalent fragments in proteins.

Authors:  Igor B Kuznetsov; S Rackovsky
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

4.  Free-energy landscape of a chameleon sequence in explicit water and its inherent alpha/beta bifacial property.

Authors:  Kazuyoshi Ikeda; Junichi Higo
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

5.  Accurate and efficient loop selections by the DFIRE-based all-atom statistical potential.

Authors:  Chi Zhang; Song Liu; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

6.  Sequence composition and environment effects on residue fluctuations in protein structures.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

7.  Structure of dimerized radixin FERM domain suggests a novel masking motif in C-terminal residues 295-304.

Authors:  Ken Kitano; Fumie Yusa; Toshio Hakoshima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-03-25

8.  Analysis of chameleon sequences by energy decomposition on a pairwise per-residue basis.

Authors:  Sukjoon Yoon; Heeyoung Jung
Journal:  Protein J       Date:  2006-07       Impact factor: 2.371

9.  Loopholes and missing links in protein modeling.

Authors:  Karen A Rossi; Carolyn A Weigelt; Akbar Nayeem; Stanley R Krystek
Journal:  Protein Sci       Date:  2007-07-27       Impact factor: 6.725

10.  Micelle-Triggered β-Hairpin to α-Helix Transition in a 14-Residue Peptide from a Choline-Binding Repeat of the Pneumococcal Autolysin LytA.

Authors:  Héctor Zamora-Carreras; Beatriz Maestro; Erik Strandberg; Anne S Ulrich; Jesús M Sanz; M Ángeles Jiménez
Journal:  Chemistry       Date:  2015-04-27       Impact factor: 5.236
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