Literature DB >> 9715748

On representation of metabolic pathways.

G Michal1.   

Abstract

Problems involved in representation of metabolism are dealt with. The specific characteristics of the various ways (verbal, graphical and by electronic means), their advantages and limitations are discussed. New developments in research pose challenges for adequate and clear demonstration of results. Comments on nomenclature and on style are included.

Mesh:

Year:  1998        PMID: 9715748     DOI: 10.1016/s0303-2647(98)00019-7

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  9 in total

1.  SubMAP: aligning metabolic pathways with subnetwork mappings.

Authors:  Ferhat Ay; Manolis Kellis; Tamer Kahveci
Journal:  J Comput Biol       Date:  2011-03       Impact factor: 1.479

2.  Visual integration of quantitative proteomic data, pathways, and protein interactions.

Authors:  Radu Jianu; Kebing Yu; Lulu Cao; Vinh Nguyen; Arthur R Salomon; David H Laidlaw
Journal:  IEEE Trans Vis Comput Graph       Date:  2010 Jul-Aug       Impact factor: 4.579

3.  Metabolic network visualization eliminating node redundance and preserving metabolic pathways.

Authors:  Romain Bourqui; Ludovic Cottret; Vincent Lacroix; David Auber; Patrick Mary; Marie-France Sagot; Fabien Jourdan
Journal:  BMC Syst Biol       Date:  2007-07-03

Review 4.  Platelet Proteomes, Pathways, and Phenotypes as Informants of Vascular Wellness and Disease.

Authors:  Joseph E Aslan
Journal:  Arterioscler Thromb Vasc Biol       Date:  2021-01-14       Impact factor: 8.311

5.  Pathways with PathWhiz.

Authors:  Allison Pon; Timothy Jewison; Yilu Su; Yongjie Liang; Craig Knox; Adam Maciejewski; Michael Wilson; David S Wishart
Journal:  Nucleic Acids Res       Date:  2015-05-01       Impact factor: 16.971

Review 6.  MDH1 and MDH2 Promote Cell Viability of Primary AT2 Cells by Increasing Glucose Uptake.

Authors:  Mu Hu; JieLai Yang; Yang Xu; Jiao Liu
Journal:  Comput Math Methods Med       Date:  2022-09-14       Impact factor: 2.809

7.  Design considerations for representing systems biology information with the Systems Biology Graphical Notation.

Authors:  Falk Schreiber; Tobias Czauderna
Journal:  J Integr Bioinform       Date:  2022-07-04

8.  SMPDB: The Small Molecule Pathway Database.

Authors:  Alex Frolkis; Craig Knox; Emilia Lim; Timothy Jewison; Vivian Law; David D Hau; Phillip Liu; Bijaya Gautam; Son Ly; An Chi Guo; Jianguo Xia; Yongjie Liang; Savita Shrivastava; David S Wishart
Journal:  Nucleic Acids Res       Date:  2009-11-30       Impact factor: 16.971

9.  A Web Tool for Generating High Quality Machine-readable Biological Pathways.

Authors:  Miguel Ramirez-Gaona; Ana Marcu; Allison Pon; Jason Grant; Anthony Wu; David S Wishart
Journal:  J Vis Exp       Date:  2017-02-08       Impact factor: 1.355

  9 in total

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