Literature DB >> 9697186

A discrimination study of human core-promoters.

M Q Zhang1.   

Abstract

A core-promoter, approximately from -60 bp upstream to +40 bp downstream of a RNA polymerase (RNAP) II transcription start site (TSS), binds to the preinitiation complex (PIC) and determine the position of TSS. Using position-specific k-tuple feature variables, a quadratic discriminant analysis (QDA) method is shown to be very effective in identifying human core-promoters.

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Year:  1998        PMID: 9697186

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  6 in total

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Authors:  Jameel Aysha; Muhammad Noman; Fawei Wang; Weican Liu; Yonggang Zhou; Haiyan Li; Xiaowei Li
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

2.  Transcription factor binding sites and other features in human and Drosophila proximal promoters.

Authors:  Charles Vinson; Raghunath Chatterjee; Peter Fitzgerald
Journal:  Subcell Biochem       Date:  2011

3.  Genome-wide detection of a TFIID localization element from an initial human disease mutation.

Authors:  Mary Q Yang; Karina Laflamme; Valer Gotea; Clinton H Joiner; Nancy E Seidel; Clara Wong; Hanna M Petrykowska; Jens Lichtenberg; Stephen Lee; Lonnie Welch; Patrick G Gallagher; David M Bodine; Laura Elnitski
Journal:  Nucleic Acids Res       Date:  2010-11-11       Impact factor: 16.971

4.  Boosting with stumps for predicting transcription start sites.

Authors:  Xiaoyue Zhao; Zhenyu Xuan; Michael Q Zhang
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

5.  Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach.

Authors:  Firoz Anwar; Syed Murtuza Baker; Taskeed Jabid; Md Mehedi Hasan; Mohammad Shoyaib; Haseena Khan; Ray Walshe
Journal:  BMC Bioinformatics       Date:  2008-10-04       Impact factor: 3.169

6.  Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs.

Authors:  Victor X Jin; Gregory A C Singer; Francisco J Agosto-Pérez; Sandya Liyanarachchi; Ramana V Davuluri
Journal:  BMC Bioinformatics       Date:  2006-03-07       Impact factor: 3.169

  6 in total

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