Literature DB >> 9697097

Yeast "operons".

X Zhang1, T F Smith.   

Abstract

To achieve coordinate gene regulation, yeast (Saccharomyces cerevisiae) appears to have exploited two distinct multifunction "operon" schemas: one, by concatenating originally separate functional domains into single polypeptides, and two, by linking opposite strand genes through common promoter elements. For example, distinct functions found in bacterial operons are often concatenated in yeast. A selective advantage, similar to that for bringing multiple related functions into a single peptide, may also explain the large numbers of yeast opposite-strand, ORF pairs sharing a common regulatory region.

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Year:  1998        PMID: 9697097     DOI: 10.1089/omi.1.1998.3.133

Source DB:  PubMed          Journal:  Microb Comp Genomics        ISSN: 1090-6592


  13 in total

1.  Prediction of operons in microbial genomes.

Authors:  M D Ermolaeva; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

2.  The use of gene clusters to infer functional coupling.

Authors:  R Overbeek; M Fonstein; M D'Souza; G D Pusch; N Maltsev
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  Predicting regulons and their cis-regulatory motifs by comparative genomics.

Authors:  A Manson McGuire; G M Church
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

4.  GC/AT-content spikes as genomic punctuation marks.

Authors:  Lingang Zhang; Simon Kasif; Charles R Cantor; Natalia E Broude
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-17       Impact factor: 11.205

5.  Co-expression of neighboring genes in the zebrafish (Danio rerio) genome.

Authors:  Huai-Kuang Tsai; Pei-Ying Huang; Cheng-Yan Kao; Daryi Wang
Journal:  Int J Mol Sci       Date:  2009-08-21       Impact factor: 6.208

6.  Genomic gene clustering analysis of pathways in eukaryotes.

Authors:  Jennifer M Lee; Erik L L Sonnhammer
Journal:  Genome Res       Date:  2003-04-14       Impact factor: 9.043

7.  Intergenic sequence between Arabidopsis caseinolytic protease B-cytoplasmic/heat shock protein100 and choline kinase genes functions as a heat-inducible bidirectional promoter.

Authors:  Ratnesh Chandra Mishra; Anil Grover
Journal:  Plant Physiol       Date:  2014-10-03       Impact factor: 8.340

8.  Aspergillus fumigatus survival in alkaline and extreme zinc-limiting environments relies on the induction of a zinc homeostasis system encoded by the zrfC and aspf2 genes.

Authors:  Jorge Amich; Rocío Vicentefranqueira; Fernando Leal; José Antonio Calera
Journal:  Eukaryot Cell       Date:  2009-12-28

9.  Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae.

Authors:  Yangyang Deng; Xianhua Dai; Qian Xiang; Zhiming Dai; Caisheng He; Jiang Wang; Jihua Feng
Journal:  BMC Genomics       Date:  2010-10-09       Impact factor: 3.969

10.  Cooperation between NRF-2 and YY-1 transcription factors is essential for triggering the expression of the PREPL-C2ORF34 bidirectional gene pair.

Authors:  Chien-Chang Huang; Wun-Shaing Wayne Chang
Journal:  BMC Mol Biol       Date:  2009-07-03       Impact factor: 2.946

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