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Literature DB >> 9691493

A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution.

Abstract

We complied a 5.8S nuclear ribosomal gene sequence database for animals, plants, and fungi using both newly generated and GenBank sequences. We demonstrate the utility of this database as an internal check to determine whether the target organism and not a contaminant has been sequenced, as a diagnostic tool for ecologists and evolutionary biologists to determine the placement of asexual fungi within larger taxonomic groups, and as a tool to help identify fungi that form ectomycorrhizae.

Mesh：

Substances：
RNA, Ribosomal, 5.8S

Year: 1998 PMID： 9691493 DOI： 10.1046/j.1365-294x.1998.00409.x

Source DB: PubMed Journal: Mol Ecol ISSN： 0962-1083 Impact factor: 6.185

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Cited

11 in total

1. Isolation, characterization, and avenacin sensitivity of a diverse collection of cereal-root-colonizing fungi.

Authors: J P Carter; J Spink; P F Cannon; M J Daniels; A E Osbourn
Journal: Appl Environ Microbiol Date: 1999-08 Impact factor: 4.792

2. Molecular diversity of arbuscular mycorrhizal fungi in Prunus africana, an endangered medicinal tree species in dry Afromontane forests of Ethiopia.

Authors: Tesfaye Wubet; Michael Weiß; Ingrid Kottke; Demel Teketay; Franz Oberwinkler
Journal: New Phytol Date: 2003-11-25 Impact factor: 10.151

3. Use of DNA barcodes to identify flowering plants.

Authors: W John Kress; Kenneth J Wurdack; Elizabeth A Zimmer; Lee A Weigt; Daniel H Janzen
Journal: Proc Natl Acad Sci U S A Date: 2005-05-31 Impact factor: 11.205

4. Effects of litter addition on ectomycorrhizal associates of a lodgepole pine (Pinus contorta) stand in Yellowstone National Park.

Authors: Kenneth W Cullings; Michael H New; Shilpa Makhija; V Thomas Parker
Journal: Appl Environ Microbiol Date: 2003-07 Impact factor: 4.792

5. Pezizalean mycorrhizas and sporocarps in ponderosa pine (Pinus ponderosa) after prescribed fires in eastern Oregon, USA.

Authors: K E Fujimura; J E Smith; T R Horton; N S Weber; J W Spatafora
Journal: Mycorrhiza Date: 2004-08-13 Impact factor: 3.387

A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution.

1. Isolation, characterization, and avenacin sensitivity of a diverse collection of cereal-root-colonizing fungi.

2. Molecular diversity of arbuscular mycorrhizal fungi in Prunus africana, an endangered medicinal tree species in dry Afromontane forests of Ethiopia.

3. Use of DNA barcodes to identify flowering plants.

4. Effects of litter addition on ectomycorrhizal associates of a lodgepole pine (Pinus contorta) stand in Yellowstone National Park.

5. Pezizalean mycorrhizas and sporocarps in ponderosa pine (Pinus ponderosa) after prescribed fires in eastern Oregon, USA.

6. Molecular characterization of 'Bhut Jolokia' the hottest chilli.

7. Only a few fungal species dominate highly diverse mycofloras associated with the common reed.

8. Variation in the ribosome interacting loop of the Sec61α from Giardia lamblia.

9. DNA barcoding the flowering plants from the tropical coral islands of Xisha (China).

Review 10. Small Non-Coding RNAs Derived From Eukaryotic Ribosomal RNA.