Literature DB >> 9684891

A biomimetic strategy in the synthesis and fragmentation of cyclic protein.

J P Tam1, Y A Lu.   

Abstract

This paper describes a simple biomimetic strategy to prepare small cyclic proteins containing multiple disulfide bonds. Our strategy involves intramolecular acyl transfer reactions to assist both the synthesis and fragmentation of these highly constrained cyclic structures in aqueous solution. To illustrate our strategy, we synthesized the naturally occurring circulin B and cyclopsychotride (CPT), both consisting of 31 amino acid residues tightly packed in a cystine-knot motif with three disulfide bonds and an end-to-end cyclic form. The synthesis of these small cyclic proteins can be achieved by orthogonal ligation of free peptide thioester via the thia zip reaction, which involves a series of reversible thiol-thiolactone exchanges to arrive at an alpha-amino thiolactone, which then undergoes an irreversible, spontaneous ring contraction through an S,N-acyl migration to form the cyclic protein. A two-step disulfide formation strategy is employed for obtaining the desired disulfide-paired products. Partial acid hydrolysis through intramolecular acyl transfer of X-Ser, X-Thr, Asp-X, and Glu-X sequences is used to obtain the assignment of the circulins disulfide bond connectives. Both synthetic circulin B and CPT are identical to the natural products and, thus, the total synthesis confirms the disulfide connectivity of circulin B and CPT contain a cystine-knot motif of 1-4, 2-5, and 3-6. In general, our strategy, based on the convergence of chemical proteolysis and aminolysis of peptide bonds through acyl transfer, is biomimetic and provides a useful approach for the synthesis and characterization of large end-to-end cyclic peptides and small proteins.

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Year:  1998        PMID: 9684891      PMCID: PMC2144060          DOI: 10.1002/pro.5560070712

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  20 in total

1.  Assignment of disulfide bonds in proteins by partial acid hydrolysis and mass spectrometry.

Authors:  Z R Zhou; D L Smith
Journal:  J Protein Chem       Date:  1990-10

2.  An unusual feature revealed by the crystal structure at 2.2 A resolution of human transforming growth factor-beta 2.

Authors:  M P Schlunegger; M G Grütter
Journal:  Nature       Date:  1992-07-30       Impact factor: 49.962

3.  Determination of the complete three-dimensional structure of the trypsin inhibitor from squash seeds in aqueous solution by nuclear magnetic resonance and a combination of distance geometry and dynamical simulated annealing.

Authors:  T A Holak; D Gondol; J Otlewski; T Wilusz
Journal:  J Mol Biol       Date:  1989-12-05       Impact factor: 5.469

4.  On the effect of a polypeptide isolated from "Kalata-Kalata" (Oldenlandia affinis DC) on the oestrogen dominated uterus.

Authors:  L Gran
Journal:  Acta Pharmacol Toxicol (Copenh)       Date:  1973

5.  Nonenzymatic formation and isomerization of protein disulfides.

Authors:  D B Wetlaufer
Journal:  Methods Enzymol       Date:  1984       Impact factor: 1.600

6.  1H 2D NMR and distance geometry study of the folding of Ecballium elaterium trypsin inhibitor, a member of the squash inhibitors family.

Authors:  A Heitz; L Chiche; D Le-Nguyen; B Castro
Journal:  Biochemistry       Date:  1989-03-21       Impact factor: 3.162

7.  Crystal structure of transforming growth factor-beta 2: an unusual fold for the superfamily.

Authors:  S Daopin; K A Piez; Y Ogawa; D R Davies
Journal:  Science       Date:  1992-07-17       Impact factor: 47.728

8.  Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae.

Authors:  R Hirata; Y Ohsumk; A Nakano; H Kawasaki; K Suzuki; Y Anraku
Journal:  J Biol Chem       Date:  1990-04-25       Impact factor: 5.157

9.  Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase.

Authors:  P M Kane; C T Yamashiro; D F Wolczyk; N Neff; M Goebl; T H Stevens
Journal:  Science       Date:  1990-11-02       Impact factor: 47.728

10.  Peptide synthesis using unprotected peptides through orthogonal coupling methods.

Authors:  J P Tam; Y A Lu; C F Liu; J Shao
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

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  20 in total

1.  Biosynthesis and antimicrobial evaluation of backbone-cyclized α-defensins.

Authors:  Angie E Garcia; Kenneth P Tai; Shadakshara S Puttamadappa; Alexander Shekhtman; Andre J Ouellette; Julio A Camarero
Journal:  Biochemistry       Date:  2011-11-09       Impact factor: 3.162

Review 2.  Chemical synthesis of circular proteins.

Authors:  James P Tam; Clarence T T Wong
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

Review 3.  Mechanisms and modifications of naturally occurring host defense peptides for anti-HIV microbicide development.

Authors:  Colleen R Eade; Matthew P Wood; Alexander M Cole
Journal:  Curr HIV Res       Date:  2012-01-01       Impact factor: 1.581

Review 4.  Cyclotides, a novel ultrastable polypeptide scaffold for drug discovery.

Authors:  Andrew Gould; Yanbin Ji; Teshome L Aboye; Julio A Camarero
Journal:  Curr Pharm Des       Date:  2011-12       Impact factor: 3.116

5.  A Synthetic mirror image of kalata B1 reveals that cyclotide activity is independent of a protein receptor.

Authors:  Lillian Sando; Sónia Troeira Henriques; Fiona Foley; Shane M Simonsen; Norelle L Daly; Kristopher N Hall; Kirk R Gustafson; Marie-Isabel Aguilar; David J Craik
Journal:  Chembiochem       Date:  2011-09-16       Impact factor: 3.164

6.  High-affinity cyclic peptide matriptase inhibitors.

Authors:  Pedro Quimbar; Uru Malik; Christian P Sommerhoff; Quentin Kaas; Lai Y Chan; Yen-Hua Huang; Maresa Grundhuber; Kerry Dunse; David J Craik; Marilyn A Anderson; Norelle L Daly
Journal:  J Biol Chem       Date:  2013-04-02       Impact factor: 5.157

7.  An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides.

Authors:  J P Tam; Y A Lu; J L Yang; K W Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

Review 8.  Biological activities of natural and engineered cyclotides, a novel molecular scaffold for peptide-based therapeutics.

Authors:  Angie E Garcia; Julio A Camarero
Journal:  Curr Mol Pharmacol       Date:  2010-11       Impact factor: 3.339

9.  Discovery of an unusual biosynthetic origin for circular proteins in legumes.

Authors:  Aaron G Poth; Michelle L Colgrave; Russell E Lyons; Norelle L Daly; David J Craik
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

10.  Chemical and biological production of cyclotides.

Authors:  Yilong Li; Tao Bi; Julio A Camarero
Journal:  Adv Bot Res       Date:  2015       Impact factor: 2.175

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