Literature DB >> 9681012

Gypsy-like retrotransposons are widespread in the plant kingdom.

A Suoniemi1, J Tanskanen, A H Schulman.   

Abstract

Retrotransposons propagate via an RNA intermediate which is then reverse-transcribed and packaged into virus-like particles. They are either copia- or gypsy-like in coding domain order and sequence similarity, the gypsy-like elements sharing their organization with the retroviruses but lacking retroviral envelope domains. Copia-like retrotransposons, or at least their reverse transcriptase domains, appear broadly distributed in higher plants, but gypsy-like elements have been reported only for scattered species. The authors have exploited the difference in domain order between these groups to amplify and clone segments bridging the reverse transcriptase-integrase region of specifically gypsy-like retrotransposons. Species representative of the diversity of higher plants yielded products whose sequences establish that gypsy-like transposons are dispersed throughout the plant genomes. This class of plant elements has been named romani retrotransposons. The presence of both types ubiquitously in the fungi, plants and animals support their existence as ancient distinct lineages and subsequent, vertical radiation.

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Year:  1998        PMID: 9681012     DOI: 10.1046/j.1365-313x.1998.00071.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  56 in total

1.  Microarray-based survey of repetitive genomic sequences in Vicia spp.

Authors:  M Nouzová; P Neumann; A Navrátilová; D W Galbraith; J Macas
Journal:  Plant Mol Biol       Date:  2001-01       Impact factor: 4.076

2.  Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum.

Authors: 
Journal:  Plant Cell       Date:  1999-09       Impact factor: 11.277

Review 3.  Transposons and genome evolution in plants.

Authors:  N Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

4.  A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

Authors:  K Shirasu; A H Schulman; T Lahaye; P Schulze-Lefert
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

5.  Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants.

Authors:  C M Vicient; R Kalendar; A H Schulman
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

6.  Sequence evolution and copy number of Ty1-copia retrotransposons in diverse plant genomes.

Authors:  Aura Navarro-Quezada; Daniel J Schoen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

7.  Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome.

Authors:  B C Meyers; S V Tingey; M Morgante
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

8.  Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana.

Authors:  S Tutois; C Cloix; C Cuvillier; M C Espagnol; J Lafleuriel; G Picard; S Tourmente
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

9.  Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced.

Authors:  Pavel Neumann; Dana Pozárková; Jirí Macas
Journal:  Plant Mol Biol       Date:  2003-10       Impact factor: 4.076

10.  Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.

Authors:  Mari Yamada; Yumi Yamagishi; Masashi Akaoka; Hidetaka Ito; Atsushi Kato
Journal:  Mol Genet Genomics       Date:  2014-04-27       Impact factor: 3.291

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