Literature DB >> 9676381

Developments in quantitative PCR.

C Orlando1, P Pinzani, M Pazzagli.   

Abstract

In recent years the growing interest in quantitative applications of the polymerase chain reaction (PCR) has favoured the development of a large number of assay procedures suitable for this purpose. In this paper we review some basic principles of quantitative PCR and in particular the role of reference materials and calibrators and the different strategies adopted for nucleic acid quantification. We focus on two methodological approaches for quantitative PCR in this review: competitive PCR and real-time quantitative PCR based on the use of fluorogenic probes. The first is one of the most common methods of quantitative PCR and we discuss the structure of the competitors and the various assay procedures. The second section is dedicated to a recent promising technology for quantitative PCR in which the use of fluorogenic probes and dedicated instrumentation allows the development of homogeneous methods. Assay performance of these methods in terms of practicability and reliability indicates that these kinds of technologies will have a widespread use in the clinical laboratory in the near future.

Mesh:

Substances:

Year:  1998        PMID: 9676381     DOI: 10.1515/CCLM.1998.045

Source DB:  PubMed          Journal:  Clin Chem Lab Med        ISSN: 1434-6621            Impact factor:   3.694


  48 in total

1.  A new mathematical model for relative quantification in real-time RT-PCR.

Authors:  M W Pfaffl
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  A new label technology for the detection of specific polymerase chain reaction products in a closed tube.

Authors:  J Nurmi; A Ylikoski; T Soukka; M Karp; T Lövgren
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

3.  Persistence and tissue distribution of DNA in normal and immunodeficient mice inoculated with polyomavirus VP1 pseudocapsid complexes or polyomavirus.

Authors:  S Heidari; N Krauzewicz; M Kalantari; A Vlastos; B E Griffin; T Dalianis
Journal:  J Virol       Date:  2000-12       Impact factor: 5.103

4.  PCR bias in ecological analysis: a case study for quantitative Taq nuclease assays in analyses of microbial communities.

Authors:  S Becker; P Böger; R Oehlmann; A Ernst
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

5.  Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR.

Authors:  K R Hristova; C M Lutenegger; K M Scow
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

Review 6.  Real-time PCR in virology.

Authors:  Ian M Mackay; Katherine E Arden; Andreas Nitsche
Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

7.  Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR.

Authors:  Michael W Pfaffl; Graham W Horgan; Leo Dempfle
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

8.  Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments.

Authors:  J R Stults; O Snoeyenbos-West; B Methe; D R Lovley; D P Chandler
Journal:  Appl Environ Microbiol       Date:  2001-06       Impact factor: 4.792

9.  Methods for estimating gene frequencies and detecting selection in bacterial populations.

Authors:  B Rannala; W G Qiu; D E Dykhuizen
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

Review 10.  Molecular methods of measurement of hepatitis B virus, hepatitis C virus, and human immunodeficiency virus infection: implications for occupational health practice.

Authors:  J H Kao; J Heptonstall; D S Chen
Journal:  Occup Environ Med       Date:  1999-11       Impact factor: 4.402

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