Literature DB >> 9671056

P5abc of the Tetrahymena ribozyme consists of three functionally independent elements.

Y Naito1, H Shiraishi, T Inoue.   

Abstract

P5abc domain of Tetrahymena LSU intron functions as an activator that is not essential for but enhances the activity of the ribozyme either when present in cis or when added in trans. This domain contains three regions (A-rich bulge, L5b, and L5c) that have been demonstrated to interact with the rest of the intron. Although these regions are presumably important for efficient activation, the role of each element is not understood in the mechanism of activation. We employed circularly permuted introns and examined the roles of each element. The results show that each of the three elements can activate the intron independently. We also found that a correlation between the activation by P5abc and the physical affinity of P5abc to the intron exists.

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Year:  1998        PMID: 9671056      PMCID: PMC1369663          DOI: 10.1017/s1355838298972016

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  26 in total

1.  Mutations in a semiconserved region of the Tetrahymena intron.

Authors:  U Pace; J W Szostak
Journal:  FEBS Lett       Date:  1991-03-11       Impact factor: 4.124

2.  A simple and rapid method for generating a deletion by PCR.

Authors:  Y Imai; Y Matsushima; T Sugimura; M Terada
Journal:  Nucleic Acids Res       Date:  1991-05-25       Impact factor: 16.971

3.  Involvement of a GNRA tetraloop in long-range RNA tertiary interactions.

Authors:  L Jaeger; F Michel; E Westhof
Journal:  J Mol Biol       Date:  1994-03-11       Impact factor: 5.469

4.  New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme.

Authors:  V Lehnert; L Jaeger; F Michel; E Westhof
Journal:  Chem Biol       Date:  1996-12

5.  Crystal structure of a group I ribozyme domain: principles of RNA packing.

Authors:  J H Cate; A R Gooding; E Podell; K Zhou; B L Golden; C E Kundrot; T R Cech; J A Doudna
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

6.  RNA tertiary structure mediation by adenosine platforms.

Authors:  J H Cate; A R Gooding; E Podell; K Zhou; B L Golden; A A Szewczak; C E Kundrot; T R Cech; J A Doudna
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

7.  GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain.

Authors:  F L Murphy; T R Cech
Journal:  J Mol Biol       Date:  1994-02-11       Impact factor: 5.469

8.  In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence.

Authors:  T R Cech; A J Zaug; P J Grabowski
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

9.  Frequent use of the same tertiary motif by self-folding RNAs.

Authors:  M Costa; F Michel
Journal:  EMBO J       Date:  1995-03-15       Impact factor: 11.598

10.  Two major tertiary folding transitions of the Tetrahymena catalytic RNA.

Authors:  B Laggerbauer; F L Murphy; T R Cech
Journal:  EMBO J       Date:  1994-06-01       Impact factor: 11.598

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  5 in total

1.  Generation of a catalytic module on a self-folding RNA.

Authors:  Wataru Yoshioka; Yoshiya Ikawa; Luc Jaeger; Hideaki Shiraishi; Tan Inoue
Journal:  RNA       Date:  2004-11-03       Impact factor: 4.942

2.  Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence.

Authors:  Steven W Sowa; Jorge Vazquez-Anderson; Chelsea A Clark; Ricardo De La Peña; Kaitlin Dunn; Emily K Fung; Mark J Khoury; Lydia M Contreras
Journal:  Nucleic Acids Res       Date:  2014-11-21       Impact factor: 16.971

3.  Artificial RNA Motifs Expand the Programmable Assembly between RNA Modules of a Bimolecular Ribozyme Leading to Application to RNA Nanostructure Design.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  Biology (Basel)       Date:  2017-10-30

4.  A two-piece derivative of a group I intron RNA as a platform for designing self-assembling RNA templates to promote Peptide ligation.

Authors:  Takahiro Tanaka; Hiroyuki Furuta; Yoshiya Ikawa
Journal:  J Nucleic Acids       Date:  2012-08-22

5.  Selection of a novel class of RNA-RNA interaction motifs based on the ligase ribozyme with defined modular architecture.

Authors:  Shoji P Ohuchi; Yoshiya Ikawa; Yoshikazu Nakamura
Journal:  Nucleic Acids Res       Date:  2008-05-06       Impact factor: 16.971

  5 in total

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