Literature DB >> 9666335

How far divergent evolution goes in proteins.

A G Murzin1.   

Abstract

In theory, mutations of protein sequences may eventually generate different functions as well as different structures. The observation of such records of protein evolution have been obscured by the dissipation of memory about the ancestors. In the past year, new advances in our understanding of divergent evolution were allowed by new protein structure determinations, including the ClpP proteases, steroid delta-isomerase, carboxypeptidase G2, the thrombin inhibitor triabin and the chloroplast Rieske protein. There is strong evidence for their distant homology with proteins of known structure despite significant functional or structural differences.

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Year:  1998        PMID: 9666335     DOI: 10.1016/s0959-440x(98)80073-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  68 in total

1.  Thermolysin and mitochondrial processing peptidase: how far structure-functional convergence goes.

Authors:  K S Makarova; N V Grishin
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  Sialidase-like Asp-boxes: sequence-similar structures within different protein folds.

Authors:  R R Copley; R B Russell; C P Ponting
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

3.  Two tricks in one bundle: helix-turn-helix gains enzymatic activity.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

4.  Common fold in helix-hairpin-helix proteins.

Authors:  X Shao; N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

5.  A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Authors:  Kira S Makarova; L Aravind; Nick V Grishin; Igor B Rogozin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

6.  A comparison of position-specific score matrices based on sequence and structure alignments.

Authors:  Anna R Panchenko; Stephen H Bryant
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

Review 7.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

8.  Retroevolution of lambda Cro toward a stable monomer.

Authors:  Kelly R LeFevre; Matthew H J Cordes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-21       Impact factor: 11.205

9.  Structural classification of zinc fingers: survey and summary.

Authors:  S Sri Krishna; Indraneel Majumdar; Nick V Grishin
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

10.  Sequence conserved for subcellular localization.

Authors:  Rajesh Nair; Burkhard Rost
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

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