Literature DB >> 9666331

Finding the genes in genomic DNA.

C B Burge1, S Karlin.   

Abstract

Genome sequencing efforts will soon generate hundreds of millions of bases of human genomic DNA containing thousands of novel genes. In the past year, the accuracy of computational gene-finding methods has improved significantly, to the point where a reasonable approximation of the gene structures within an extended genomic region can often be predicted in advance of more detailed experimental studies.

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Year:  1998        PMID: 9666331     DOI: 10.1016/s0959-440x(98)80069-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  160 in total

1.  trEST, trGEN and Hits: access to databases of predicted protein sequences.

Authors:  M Pagni; C Iseli; T Junier; L Falquet; V Jongeneel; P Bucher
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

Authors:  T Gaasterland; A Sczyrba; E Thomas; G Aytekin-Kurban; P Gordon; C W Sensen
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

3.  Positional characterisation of false positives from computational prediction of human splice sites.

Authors:  T A Thanaraj
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

4.  An assessment of gene prediction accuracy in large DNA sequences.

Authors:  R Guigó; P Agarwal; J F Abril; M Burset; J W Fickett
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

5.  MODBASE, a database of annotated comparative protein structure models.

Authors:  Ursula Pieper; Narayanan Eswar; Ashley C Stuart; Valentin A Ilyin; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  SGP-1: prediction and validation of homologous genes based on sequence alignments.

Authors:  T Wiehe; S Gebauer-Jung; T Mitchell-Olds; R Guigó
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

7.  In silico identification of novel selenoproteins in the Drosophila melanogaster genome.

Authors:  S Castellano; N Morozova; M Morey; M J Berry; F Serras; M Corominas; R Guigó
Journal:  EMBO Rep       Date:  2001-08       Impact factor: 8.807

8.  Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.

Authors:  M Brudno; M S Gelfand; S Spengler; M Zorn; I Dubchak; J G Conboy
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

9.  Computational inference of homologous gene structures in the human genome.

Authors:  R F Yeh; L P Lim; C B Burge
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

10.  Evaluation of gene-finding programs on mammalian sequences.

Authors:  S Rogic; A K Mackworth; F B Ouellette
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

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