Literature DB >> 9657972

Chemical mechanism of the endogenous argininosuccinate lyase activity of duck lens delta2-crystallin.

C Y Wu1, H J Lee, S H Wu, S T Chen, S H Chiou, G G Chang.   

Abstract

The endogenous argininosuccinate lyase activity of duck delta2-crystallin was specifically inactivated by the histidine-specific reagent, diethyl pyrocarbonate. The protein was protected by l-citrulline or l-arginine from the diethyl pyrocarbonate inactivation. To characterize further the chemical mechanism of the delta2-crystallin-catalysed reaction, deuterium-labelled argininosuccinate was enzymically synthesized from fumarate and l-arginine with delta2-crystallin in 2H2O. The argininosuccinate synthesized contained about 19% of the anhydride form; however, the deuterium was clearly demonstrated to be incorporated enantioselectively. Only the pro-HR atom at C-9 of the succinate moiety was labelled in the [2H]argininosuccinate-9-d synthesized, which indicates an anti-elimination mechanism for the endogenous argininosuccinate lyase activity of delta2-crystallin. The enzymic activity of duck lens delta2-crystallin in the pH range 5.5-8.5 was investigated using both protium- and deuterium-labelled argininosuccinate as the substrate. From the logkcat versus pH plot, two molecular pKa values of 6.18+/-0.02 and 8.75+/-0.03 were detected in the delta2-crystallin-argininosuccinate binary complex. The former must be dehydronated and the latter hydronated to achieve an optimum reaction rate. The logkcat/Km versus pH plot suggested two molecular pKa values of 5.96+/-0.09 and 8.29+/-0.10 for the free delta2-crystallin to be involved in the substrate binding. Small kinetic isotope effects of 1.17+/-0.02 and 1.05+/-0.09 were found for kcat and kcat/Km respectively. Combining results from labelling and kinetic analysis indicates that the endogenous argininosuccinate lyase activity of duck delta2-crystallin is compatible with a stepwise E1cB mechanism, the rate-limiting step probably at the C-N bond-cleavage step.

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Year:  1998        PMID: 9657972      PMCID: PMC1219589          DOI: 10.1042/bj3330327

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  41 in total

1.  Biochemical characterization and kinetic analysis of duck delta-crystallin with endogenous argininosuccinate lyase activity.

Authors:  H J Lee; S H Chiou; G G Chang
Journal:  Biochem J       Date:  1992-04-15       Impact factor: 3.857

2.  The origin of multiply sigmoid curves of pH-dependence. The partitioning of groups among titration pK values.

Authors:  H B Dixon; S D Clarke; G A Smith; T K Carne
Journal:  Biochem J       Date:  1991-08-15       Impact factor: 3.857

3.  Evaluation of catalytic free energies in genetically modified proteins.

Authors:  A Warshel; F Sussman; J K Hwang
Journal:  J Mol Biol       Date:  1988-05-05       Impact factor: 5.469

4.  Reversible stepwise mechanism involving a carbanion intermediate in the elimination of ammonia from L-histidine catalyzed by histidine ammonia-lyase.

Authors:  T Furuta; H Takahashi; H Shibasaki; Y Kasuya
Journal:  J Biol Chem       Date:  1992-06-25       Impact factor: 5.157

5.  Analysis of naturally occurring and site-directed mutations in the argininosuccinate lyase gene.

Authors:  P Barbosa; M Cialkowski; W E O'Brien
Journal:  J Biol Chem       Date:  1991-03-15       Impact factor: 5.157

6.  Isotopic probes of the argininosuccinate lyase reaction.

Authors:  S C Kim; F M Raushel
Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

7.  Mechanism of C-3 hydrogen exchange and the elimination of ammonia in the 3-methylaspartate ammonia-lyase reaction.

Authors:  N P Botting; D Gani
Journal:  Biochemistry       Date:  1992-02-11       Impact factor: 3.162

8.  Nitro analogs of substrates for argininosuccinate synthetase and argininosuccinate lyase.

Authors:  F M Raushel
Journal:  Arch Biochem Biophys       Date:  1984-08-01       Impact factor: 4.013

9.  Substrate specificity of the 3-methylaspartate ammonia-lyase reaction: observation of differential relative reaction rates for substrate-product pairs.

Authors:  N P Botting; M Akhtar; M A Cohen; D Gani
Journal:  Biochemistry       Date:  1988-04-19       Impact factor: 3.162

10.  Primary deuterium isotope effects for the 3-methylaspartase-catalyzed deamination of (2S)-aspartic acid, (2S,3S)-3-methylaspartic acid, and (2S,3S)-3-ethylaspartic acid.

Authors:  N P Botting; M A Cohen; M Akhtar; D Gani
Journal:  Biochemistry       Date:  1988-04-19       Impact factor: 3.162

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  2 in total

Review 1.  Chemical biology of protein arginine modifications in epigenetic regulation.

Authors:  Jakob Fuhrmann; Kathleen W Clancy; Paul R Thompson
Journal:  Chem Rev       Date:  2015-05-13       Impact factor: 60.622

2.  Biochemical and biophysical analysis of five disease-associated human adenylosuccinate lyase mutants.

Authors:  Lushanti De Zoysa Ariyananda; Peychii Lee; Christina Antonopoulos; Roberta F Colman
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

  2 in total

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