Literature DB >> 9649632

Enhanced concatemer cloning-a modification to the SAGE (Serial Analysis of Gene Expression) technique.

J Powell1.   

Abstract

The Serial Analysis of Gene Expression (SAGE) method, described in 1995 by Velculescu et al ., represents a powerful means to compare gene expression between two mRNA populations. An improvement to SAGE that removes contaminating linker molecules, which compromise the efficiency of the method, has been developed. This modification utilises biotinylated PCR primers, which generate biotinylated linkers at an early stage in the SAGE protocol, thus allowing removal of the unwanted linkers by binding to streptavidin-coated magnetic beads at a later stage. The application of this modification resulted in the rapid generation of high ditag yields and clones with large average insert sizes.

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Year:  1998        PMID: 9649632      PMCID: PMC147715          DOI: 10.1093/nar/26.14.3445

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Characterization of the yeast transcriptome.

Authors:  V E Velculescu; L Zhang; W Zhou; J Vogelstein; M A Basrai; D E Bassett; P Hieter; B Vogelstein; K W Kinzler
Journal:  Cell       Date:  1997-01-24       Impact factor: 41.582

2.  A model for p53-induced apoptosis.

Authors:  K Polyak; Y Xia; J L Zweier; K W Kinzler; B Vogelstein
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

3.  SAGE transcript profiles for p53-dependent growth regulation.

Authors:  S L Madden; E A Galella; J Zhu; A H Bertelsen; G A Beaudry
Journal:  Oncogene       Date:  1997-08-28       Impact factor: 9.867

4.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

5.  Gene expression profiles in normal and cancer cells.

Authors:  L Zhang; W Zhou; V E Velculescu; S E Kern; R H Hruban; S R Hamilton; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

  5 in total
  11 in total

1.  Sequence-tagged microsatellite profiling (STMP): a rapid technique for developing SSR markers.

Authors:  M J Hayden; P J Sharp
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

Review 2.  Recent advances in molecular biological techniques and their relevance to pulmonary research.

Authors:  B W Robinson; D J Erle; D A Jones; S Shapiro; W J Metzger; S M Albelda; W C Parks; A Boylan
Journal:  Thorax       Date:  2000-04       Impact factor: 9.139

3.  Identification and prevention of a GC content bias in SAGE libraries.

Authors:  E H Margulies; S L Kardia; J W Innis
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

4.  Small amplified RNA-SAGE: an alternative approach to study transcriptome from limiting amount of mRNA.

Authors:  Catheline Vilain; Frederick Libert; David Venet; Sabine Costagliola; Gilbert Vassart
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

5.  Genomic signature tags (GSTs): a system for profiling genomic DNA.

Authors:  John J Dunn; Sean R McCorkle; Laura A Praissman; Geoffrey Hind; Daniel Van Der Lelie; Wadie F Bahou; Dmitri V Gnatenko; Maureen K Krause
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

6.  Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Authors:  Toshiyuki Shiraki; Shinji Kondo; Shintaro Katayama; Kazunori Waki; Takeya Kasukawa; Hideya Kawaji; Rimantas Kodzius; Akira Watahiki; Mari Nakamura; Takahiro Arakawa; Shiro Fukuda; Daisuke Sasaki; Anna Podhajska; Matthias Harbers; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

7.  Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.

Authors:  Austin P So; Robin F B Turner; Charles A Haynes
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

8.  Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.

Authors:  Jaswinder Khattra; Allen D Delaney; Yongjun Zhao; Asim Siddiqui; Jennifer Asano; Helen McDonald; Pawan Pandoh; Noreen Dhalla; Anna-Liisa Prabhu; Kevin Ma; Stephanie Lee; Adrian Ally; Angela Tam; Danne Sa; Sean Rogers; David Charest; Jeff Stott; Scott Zuyderduyn; Richard Varhol; Connie Eaves; Steven Jones; Robert Holt; Martin Hirst; Pamela A Hoodless; Marco A Marra
Journal:  Genome Res       Date:  2006-11-29       Impact factor: 9.043

9.  Modified serial analysis of gene expression method for construction of gene expression profiles of microbial eukaryotic species.

Authors:  Kathryn J Coyne; JoAnn M Burkholder; Robert A Feldman; David A Hutchins; S Craig Cary
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

10.  Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis.

Authors:  Malali Gowda; Chatchawan Jantasuriyarat; Ralph A Dean; Guo-Liang Wang
Journal:  Plant Physiol       Date:  2004-03       Impact factor: 8.340

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