Literature DB >> 9649316

Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six tyrosine --> phenylalanine mutants.

Y Yamagata1, M Kubota, Y Sumikawa, J Funahashi, K Takano, S Fujii, K Yutani.   

Abstract

The contribution of hydrogen bonds to the conformational stability of human lysozyme was investigated by the combination of calorimetric and X-ray analyses of six Tyr --> Phe mutants. Unfolding Delta G and unfolding Delta H values of the Tyr --> Phe mutant proteins were changed by from +0.3 to -4.0 kJ/mol and from 0 to -16 kJ/mol, respectively, compared to those of the wild-type protein. The net contribution of a hydrogen bond at a specific site to stability (Delta Gwild/HB), considering factors affected by substitutions, was evaluated on the basis of X-ray structures of the mutant proteins. In the present study, one of six mutant proteins was suitable for evaluating the strength of the hydrogen bond. Delta Gwild/HB for the intramolecular hydrogen bond at Tyr124 was evaluated to be 7.5 kJ/mol. Results of the analysis of other mutants also suggest that hydrogen bonds of the hydroxyl group of Tyr, including the hydrogen bond with a water molecule, contribute to the stabilization of the human lysozyme.

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Year:  1998        PMID: 9649316     DOI: 10.1021/bi980431i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Heat capacity changes upon burial of polar and nonpolar groups in proteins.

Authors:  V V Loladze; D N Ermolenko; G I Makhatadze
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

3.  Molecular dynamics simulations of the Bcl-2 protein to predict the structure of its unordered flexible loop domain.

Authors:  Pawan Kumar Raghav; Yogesh Kumar Verma; Gurudutta U Gangenahalli
Journal:  J Mol Model       Date:  2011-08-25       Impact factor: 1.810

4.  Predicting the melting point of human C-type lysozyme mutants.

Authors:  Deeptak Verma; Donald J Jacobs; Dennis R Livesay
Journal:  Curr Protein Pept Sci       Date:  2010-11       Impact factor: 3.272

5.  Contribution of hydrogen bonds to protein stability.

Authors:  C Nick Pace; Hailong Fu; Katrina Lee Fryar; John Landua; Saul R Trevino; David Schell; Richard L Thurlkill; Satoshi Imura; J Martin Scholtz; Ketan Gajiwala; Jozef Sevcik; Lubica Urbanikova; Jeffery K Myers; Kazufumi Takano; Eric J Hebert; Bret A Shirley; Gerald R Grimsley
Journal:  Protein Sci       Date:  2014-03-25       Impact factor: 6.725

6.  Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.

Authors:  Deeptak Verma; Donald J Jacobs; Dennis R Livesay
Journal:  PLoS Comput Biol       Date:  2012-03-01       Impact factor: 4.475

7.  Structure and effective charge characterization of proteins by a mobility capillary electrophoresis based method.

Authors:  Wenjing Zhang; Haimei Wu; Rongkai Zhang; Xiang Fang; Wei Xu
Journal:  Chem Sci       Date:  2019-07-03       Impact factor: 9.825

8.  Nickel(II) complexes based on L-amino-acid-derived ligands: synthesis, characterization and study of the role of the supramolecular structure in carbon dioxide capture.

Authors:  Andrea Rivas Marquina; Federico Movilla; Olga Carolina Sánchez Montilva; Eva Rentschler; Luca Carrella; Pablo Albores; Florencia Di Salvo
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2020-09-03
  8 in total

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