Literature DB >> 9631302

Quantum mechanical calculations on biological systems.

R A Friesner1, M D Beachy.   

Abstract

Improvements in quantum chemical methods have led to increased applications to biological problems, including the development of potential energy functions for molecular mechanics and modeling of the reactive chemistry in enzyme active sites, with particularly interesting progress being made for metal-containing systems. An important direction is the development and application of hybrid quantum chemical-molecular mechanics methods.

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Year:  1998        PMID: 9631302     DOI: 10.1016/s0959-440x(98)80048-1

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Modified AutoDock for accurate docking of protein kinase inhibitors.

Authors:  Oleksandr V Buzko; Anthony C Bishop; Kevan M Shokat
Journal:  J Comput Aided Mol Des       Date:  2002-02       Impact factor: 3.686

2.  Insights into saquinavir resistance in the G48V HIV-1 protease: quantum calculations and molecular dynamic simulations.

Authors:  Kitiyaporn Wittayanarakul; Ornjira Aruksakunwong; Suwipa Saen-oon; Wasun Chantratita; Vudhichai Parasuk; Pornthep Sompornpisut; Supot Hannongbua
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

3.  Structures of protonated arginine dimer and bradykinin investigated by density functional theory: further support for stable gas-phase salt bridges.

Authors:  E F Strittmatter; E R Williams
Journal:  J Phys Chem A       Date:  2000-06-29       Impact factor: 2.781

4.  Transition state theory can be used in studies of enzyme catalysis: lessons from simulations of tunnelling and dynamical effects in lipoxygenase and other systems.

Authors:  Mats H M Olsson; Janez Mavri; Arieh Warshel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

5.  On possible pitfalls in ab initio quantum mechanics/molecular mechanics minimization approaches for studies of enzymatic reactions.

Authors:  Marco Klähn; Sonja Braun-Sand; Edina Rosta; Arieh Warshel
Journal:  J Phys Chem B       Date:  2005-08-18       Impact factor: 2.991

6.  Accelerating QM/MM free energy calculations: representing the surroundings by an updated mean charge distribution.

Authors:  Edina Rosta; Maciej Haranczyk; Zhen T Chu; Arieh Warshel
Journal:  J Phys Chem B       Date:  2008-04-16       Impact factor: 2.991

Review 7.  Investigating the mechanisms of photosynthetic proteins using continuum electrostatics.

Authors:  G Matthias Ullmann; Edda Kloppmann; Timm Essigke; Eva-Maria Krammer; Astrid R Klingen; Torsten Becker; Elisa Bombarda
Journal:  Photosynth Res       Date:  2008-05-14       Impact factor: 3.573

8.  Dissociation energies of deoxyribose nucleotide dimer anions measured using blackbody infrared radiative dissociation.

Authors:  E F Strittmatter; P D Schnier; J S Klassen; E R Williams
Journal:  J Am Soc Mass Spectrom       Date:  1999-11       Impact factor: 3.109

Review 9.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

Review 10.  Therapeutic strategies underpinning the development of novel techniques for the treatment of HIV infection.

Authors:  Jian J Tan; Xiao J Cong; Li M Hu; Cun X Wang; Lee Jia; Xing-Jie Liang
Journal:  Drug Discov Today       Date:  2010-01-22       Impact factor: 7.851

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