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Literature DB >> 9631300

Theory of biomolecular recognition.

Abstract

Specific, noncovalent binding of biomolecules can only be understood by considering structural, thermodynamic, and kinetic issues. The theoretical foundations for such analyses have been clarified in the past year. Computational techniques for both particle-based and continuum models continue to improve and to yield useful insights into an ever wider range of biomolecular systems.

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Year: 1998 PMID： 9631300 DOI： 10.1016/s0959-440x(98)80046-8

Source DB: PubMed Journal: Curr Opin Struct Biol ISSN： 0959-440X Impact factor: 6.809

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Cited

45 in total

1. A systematic study of low-resolution recognition in protein--protein complexes.

Authors: I A Vakser; O G Matar; C F Lam
Journal: Proc Natl Acad Sci U S A Date: 1999-07-20 Impact factor: 11.205

2. Free energy decomposition of protein-protein interactions.

Authors: S Y Noskov; C Lim
Journal: Biophys J Date: 2001-08 Impact factor: 4.033

3. How common is the funnel-like energy landscape in protein-protein interactions?

Authors: A Tovchigrechko; I A Vakser
Journal: Protein Sci Date: 2001-08 Impact factor: 6.725

4. Revisiting free energy calculations: a theoretical connection to MM/PBSA and direct calculation of the association free energy.

Authors: Jessica M J Swanson; Richard H Henchman; J Andrew McCammon
Journal: Biophys J Date: 2004-01 Impact factor: 4.033

Theory of biomolecular recognition.

1. A systematic study of low-resolution recognition in protein--protein complexes.

2. Free energy decomposition of protein-protein interactions.

3. How common is the funnel-like energy landscape in protein-protein interactions?

4. Revisiting free energy calculations: a theoretical connection to MM/PBSA and direct calculation of the association free energy.

5. Docking of protein models.

6. Downhill kinetics of biomolecular interface binding: globally connected scenario.

7. Calculation of absolute protein-ligand binding affinity using path and endpoint approaches.

8. Quantifying kinetic paths of protein folding.

9. Electrostatic properties of protein-protein complexes.

10. Quantifying the kinetic paths of flexible biomolecular recognition.