Literature DB >> 9628938

A rapid, small scale method for characterization of plasmid insertions in the Dictyostelium genome.

C Barth1, D J Fraser, P R Fisher.   

Abstract

A rapid, simple method for characterization of plasmid insertions in the Dictyostelium discoideum genome was developed. It is based on the capability of linear plasmid multimers in the insertions to recircularize efficiently in Escherichia coli cells. This recombinational recircularization of plasmid multimers provides a highly sensitive and reliable tool for determining whether individual Dictyostelium transformants resulted from restriction enzyme-mediated integration (REMI) or from recombinational integration of plasmid (RIP). The method also reveals any rearrangements in RIP insertions and provides an estimate of the vector copy number in any particular transformant.

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Year:  1998        PMID: 9628938      PMCID: PMC147678          DOI: 10.1093/nar/26.13.3317

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Library-independent cloning of genomic fragments adjacent to vector integration sites: isolation of the EB4-PSV gene from a Dictyostelium gene disruption transformant.

Authors:  M Hildebrandt; W Nellen
Journal:  Biochem Biophys Res Commun       Date:  1991-12-16       Impact factor: 3.575

2.  High efficiency transformation of E. coli by high voltage electroporation.

Authors:  W J Dower; J F Miller; C W Ragsdale
Journal:  Nucleic Acids Res       Date:  1988-07-11       Impact factor: 16.971

3.  A mini-screen technique for analyzing nuclear DNA from a single Dictyostelium colony.

Authors:  J E Hughes; D L Welker
Journal:  Nucleic Acids Res       Date:  1988-03-25       Impact factor: 16.971

4.  Developmental regulation of Dictyostelium discoideum actin gene fusions carried on low-copy and high-copy transformation vectors.

Authors:  D A Knecht; S M Cohen; W F Loomis; H F Lodish
Journal:  Mol Cell Biol       Date:  1986-11       Impact factor: 4.272

5.  Homologous recombination and the repair of double-strand breaks during cotransformation of Dictyostelium discoideum.

Authors:  K S Katz; D I Ratner
Journal:  Mol Cell Biol       Date:  1988-07       Impact factor: 4.272

6.  Efficient circularization in Escherichia coli of linear plasmid multimers from Dictyostelium discoideum genomic DNA.

Authors:  C Barth; Z Wilczynska; L Pontes; D J Fraser; P R Fisher
Journal:  Plasmid       Date:  1996-09       Impact factor: 3.466

7.  DNA-mediated transformation in Dictyostelium discoideum: regulated expression of an actin gene fusion.

Authors:  W Nellen; C Silan; R A Firtel
Journal:  Mol Cell Biol       Date:  1984-12       Impact factor: 4.272

8.  Tagging developmental genes in Dictyostelium by restriction enzyme-mediated integration of plasmid DNA.

Authors:  A Kuspa; W F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

  8 in total
  5 in total

1.  Insertion mutagenesis of the yeast Candida famata (Debaryomyces hansenii) by random integration of linear DNA fragments.

Authors:  Kostyantyn V Dmytruk; Andriy Y Voronovsky; Andriy A Sibirny
Journal:  Curr Genet       Date:  2006-06-13       Impact factor: 3.886

2.  Diverse cytopathologies in mitochondrial disease are caused by AMP-activated protein kinase signaling.

Authors:  Paul B Bokko; Lisa Francione; Esther Bandala-Sanchez; Afsar U Ahmed; Sarah J Annesley; Xiuli Huang; Taruna Khurana; Alan R Kimmel; Paul R Fisher
Journal:  Mol Biol Cell       Date:  2007-03-01       Impact factor: 4.138

Review 3.  A user's guide to restriction enzyme-mediated integration in Dictyostelium.

Authors:  Nicholas A Guerin; Denis A Larochelle
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Chaperonin 60 and mitochondrial disease in Dictyostelium.

Authors:  Martha Kotsifas; Christian Barth; Arturo de Lozanne; Sui T Lay; Paul R Fisher
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

5.  Modelling of Neuronal Ceroid Lipofuscinosis Type 2 in Dictyostelium discoideum Suggests That Cytopathological Outcomes Result from Altered TOR Signalling.

Authors:  Paige K Smith; Melodi G Sen; Paul R Fisher; Sarah J Annesley
Journal:  Cells       Date:  2019-05-16       Impact factor: 6.600

  5 in total

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