Literature DB >> 9588877

DNA copy number amplifications in human neoplasms: review of comparative genomic hybridization studies.

S Knuutila1, A M Björkqvist, K Autio, M Tarkkanen, M Wolf, O Monni, J Szymanska, M L Larramendy, J Tapper, H Pere, W El-Rifai, S Hemmer, V M Wasenius, V Vidgren, Y Zhu.   

Abstract

This review summarizes reports of recurrent DNA sequence copy number amplifications in human neoplasms detected by comparative genomic hybridization. Some of the chromosomal areas with recurrent DNA copy number amplifications (amplicons) of 1p22-p31, 1p32-p36, 1q, 2p13-p16, 2p23-p25, 2q31-q33, 3q, 5p, 6p12-pter, 7p12-p13, 7q11.2, 7q21-q22, 8p11-p12, 8q, 11q13-q14, 12p, 12q13-q21, 13q14, 13q22-qter, 14q13-q21, 15q24-qter, 17p11.2-p12, 17q12-q21, 17q22-qter, 18q, 19p13.2-pter, 19cen-q13.3, 20p11.2-p12, 20q, Xp11.2-p21, and Xp11-q13 and genes therein are presented in more detail. The paper with more than 150 references and two tables can be accessed from our web site http://www.helsinki.fi/lglvwww/CMG.html. The data will be updated biannually until the year 2001.

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Year:  1998        PMID： 9588877      PMCID： PMC1858578     

Source DB:  PubMed          Journal:  Am J Pathol        ISSN： 0002-9440            Impact factor:   4.307


  138 in total

1.  Comparative genomic hybridization as a tool to define two distinct chromosome 12-derived amplification units in well-differentiated liposarcomas.

Authors:  R F Suijkerbuijk; D E Olde Weghuis; M Van den Berg; F Pedeutour; A Forus; O Myklebost; C Glier; C Turc-Carel; A Geurts van Kessel
Journal:  Genes Chromosomes Cancer       Date:  1994-04       Impact factor: 5.006

2.  Changes in DNA copy number in primary gastric carcinomas by comparative genomic hybridization.

Authors:  Y Koizumi; S i Tanaka; R Mou; H Koganei; A Kokawa; R Kitamura; H Yamauchi; K Ookubo; T Saito; S Tominaga; K Matsumura; H Shimada; N Tsuchida; H Sekihara
Journal:  Clin Cancer Res       Date:  1997-07       Impact factor: 12.531

3.  Optimization of comparative genomic hybridization using fluorochrome conjugated to dCTP and dUTP nucleotides.

Authors:  W el-Rifai; M L Larramendy; A M Björkqvist; S Hemmer; S Knuutila
Journal:  Lab Invest       Date:  1997-12       Impact factor: 5.662

4.  Characteristic pattern of chromosomal gains and losses in marginal zone B cell lymphoma detected by comparative genomic hybridization.

Authors:  J Dierlamm; C Rosenberg; M Stul; S Pittaluga; I Wlodarska; L Michaux; M Dehaen; G Verhoef; J Thomas; W de Kelver; T Bakker-Schut; J J Cassiman; A K Raap; C De Wolf-Peeters; H Van den Berghe; A Hagemeijer
Journal:  Leukemia       Date:  1997-05       Impact factor: 11.528

5.  Comparative genomic hybridization study on pooled DNAs from tumors of one clinical-pathological entity.

Authors:  S Knuutila; G Armengol; A M Björkqvist; W el-Rifai; M L Larramendy; O Monni; J Szymanska
Journal:  Cancer Genet Cytogenet       Date:  1998-01-01

6.  Overrepresentation of 1q21-23 and 12q13-21 in lipoma-like liposarcomas but not in benign lipomas: a comparative genomic hybridization study.

Authors:  J Szymanska; M Virolainen; M Tarkkanen; T Wiklund; S Asko-Seljavaara; E Tukiainen; I Elomaa; C Blomqvist; S Knuutila
Journal:  Cancer Genet Cytogenet       Date:  1997-11

7.  Tumor size-related DNA copy number changes occur in solitary fibrous tumors but not in hemangiopericytomas.

Authors:  M M Miettinen; W el-Rifai; M Sarlomo-Rikala; L C Andersson; S Knuutila
Journal:  Mod Pathol       Date:  1997-12       Impact factor: 7.842

8.  Distinct chromosomal imbalances in uterine serous and endometrioid carcinomas.

Authors:  H Pere; J Tapper; T Wahlström; S Knuutila; R Butzow
Journal:  Cancer Res       Date:  1998-03-01       Impact factor: 12.701

9.  Consistent genetic alterations in xenografts of proximal stomach and gastro-esophageal junction adenocarcinomas.

Authors:  W El-Rifai; J C Harper; O W Cummings; E R Hyytinen; H F Frierson; S Knuutila; S M Powell
Journal:  Cancer Res       Date:  1998-01-01       Impact factor: 12.701

10.  Comparison of DNA copy number changes in malignant mesothelioma, adenocarcinoma and large-cell anaplastic carcinoma of the lung.

Authors:  A M Björkqvist; L Tammilehto; S Nordling; M Nurminen; S Anttila; K Mattson; S Knuutila
Journal:  Br J Cancer       Date:  1998       Impact factor: 7.640
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  118 in total

Review 1.  Comparative genomic hybridisation.

Authors:  M M Weiss; M A Hermsen; G A Meijer; N C van Grieken; J P Baak; E J Kuipers; P J van Diest
Journal:  Mol Pathol       Date:  1999-10

2.  Quantifying single gene copy number by measuring fluorescent probe lengths on combed genomic DNA.

Authors:  J Herrick; X Michalet; C Conti; C Schurra; A Bensimon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  LFG: an anti-apoptotic gene that provides protection from Fas-mediated cell death.

Authors:  N V Somia; M J Schmitt; D E Vetter; D Van Antwerp; S F Heinemann; I M Verma
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

4.  Online access to CGH data of DNA sequence copy number changes.

Authors:  S Knuutila; K Autio; Y Aalto
Journal:  Am J Pathol       Date:  2000-08       Impact factor: 4.307

5.  Liver metastatic ability of human melanoma cell line is associated with losses of chromosomes 4, 9p21-pter and 10p.

Authors:  Z Adám; R Adány; A Ladányi; J Tímár; M Balázs
Journal:  Clin Exp Metastasis       Date:  2000       Impact factor: 5.150

6.  Genetic instability of adult T-cell leukemia/lymphoma by comparative genomic hybridization analysis.

Authors:  Kunhiro Tsukasaki
Journal:  J Clin Immunol       Date:  2002-03       Impact factor: 8.317

7.  Application of comparative genomic hybridization, spectral karyotyping, and microarray analysis in the identification of subtype-specific patterns of genomic changes in rhabdomyosarcoma.

Authors:  A Pandita; M Zielenska; P Thorner; J Bayani; R Godbout; M Greenberg; J A Squire
Journal:  Neoplasia       Date:  1999-08       Impact factor: 5.715

8.  Mapping of the gene for the human telomerase reverse transcriptase, hTERT, to chromosome 5p15.33 by fluorescence in situ hybridization.

Authors:  L A Bryce; N Morrison; S F Hoare; S Muir; W N Keith
Journal:  Neoplasia       Date:  2000 May-Jun       Impact factor: 5.715

9.  Transgenic over-expression of the microRNA miR-17-92 cluster promotes proliferation and inhibits differentiation of lung epithelial progenitor cells.

Authors:  Yun Lu; J Michael Thomson; Ho Yuen Frank Wong; Scott M Hammond; Brigid L M Hogan
Journal:  Dev Biol       Date:  2007-08-09       Impact factor: 3.582

10.  Amplification of the 3q26.3 locus is associated with progression to invasive cancer and is a negative prognostic factor in head and neck squamous cell carcinomas.

Authors:  Bhuvanesh Singh; Archontoula Stoffel; Swarna Gogineni; Ashok Poluri; David G Pfister; Ashok R Shaha; Alok Pathak; George Bosl; Carlos Cordon-Cardo; Jatin P Shah; Pulivarthi H Rao
Journal:  Am J Pathol       Date:  2002-08       Impact factor: 4.307
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