Literature DB >> 9547287

Transverse formamide gradients as a simple and easy way to optimise DNA single-strand conformation polymorphism analysis.

B Paccoud1, J Bourguignon, M Diarra-Mehrpour, J P Martin, R Sesboüé.   

Abstract

Although widely used, the detection of DNA mutations by the single-strand conformation polymorphism (SSCP) method is often hampered by the need to examine a large set of electrophoretic conditions in order to select the one suited to the DNA sequence under study. We show here that the use of transverse chemical gradient gels allows for a quick and easy optimisation of SSCP analysis, as exemplified on two mutations in exon 2 of the alpha-1-antitrypsin gene.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9547287      PMCID: PMC147539          DOI: 10.1093/nar/26.9.2245

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE.

Authors:  B Budowle; R Chakraborty; A M Giusti; A J Eisenberg; R C Allen
Journal:  Am J Hum Genet       Date:  1991-01       Impact factor: 11.025

2.  Characterization of the gene and protein of the common alpha 1-antitrypsin normal M2 allele.

Authors:  T Nukiwa; M L Brantly; F Ogushi; G A Fells; R G Crystal
Journal:  Am J Hum Genet       Date:  1988-09       Impact factor: 11.025

3.  Molecular characterisation of three alpha-1-antitrypsin deficiency variants: proteinase inhibitor (Pi) nullcardiff (Asp256----Val); PiMmalton (Phe51----deletion) and PiI (Arg39----Cys).

Authors:  A Graham; N A Kalsheker; C R Newton; F J Bamforth; S J Powell; A F Markham
Journal:  Hum Genet       Date:  1989-12       Impact factor: 4.132

4.  Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms.

Authors:  M Orita; H Iwahana; H Kanazawa; K Hayashi; T Sekiya
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

5.  SSCP primer design based on single-strand DNA structure predicted by a DNA folding program.

Authors:  D A Nielsen; A Novoradovsky; D Goldman
Journal:  Nucleic Acids Res       Date:  1995-06-25       Impact factor: 16.971

6.  Transverse temperature-gradient single-strand conformation polymorphism analysis for temperature optimization of 'Cold'-SSCP mutation detection.

Authors:  M B Grace; G S Bambeck; G S Buzard; B D Weintraub
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

7.  Single-strand conformation polymorphism analysis by perpendicular temperature-gradient gel electrophoresis.

Authors:  K Sugano; N Fukayama; H Ohkura; Y Shimosato; Y Yamada; T Inoue; T Sekiya; K Hayashi
Journal:  Electrophoresis       Date:  1995-01       Impact factor: 3.535

8.  Complete sequence of the cDNA for human alpha 1-antitrypsin and the gene for the S variant.

Authors:  G L Long; T Chandra; S L Woo; E W Davie; K Kurachi
Journal:  Biochemistry       Date:  1984-10-09       Impact factor: 3.162

9.  Optimization of nonisotopic PCR-single-strand conformation polymorphism analysis.

Authors:  H Blanché; C Valette; C Bellanné-Chantelot
Journal:  Clin Chem       Date:  1997-11       Impact factor: 8.327

10.  Identification of three novel mutations in the CFTR gene using temperature-optimized non-radioactive conditions for SSCP analysis.

Authors:  K Grade; I Grunewald; I Graupner; F Behrens; C Coutelle
Journal:  Hum Genet       Date:  1994-08       Impact factor: 4.132

View more
  1 in total

1.  Improvement of the sensitivity and resolution of PCR-SSCP analysis with optimized primer concentrations in PCR products.

Authors:  Xilin Zhu; Nifang Niu; Yang Liu; Te Du; Dongmei Chen; Xin Wang; Harvest F Gu; Ying Liu
Journal:  J Genet       Date:  2006-12       Impact factor: 1.508

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.