Literature DB >> 9539728

Membrane-bound state of the colicin E1 channel domain as an extended two-dimensional helical array.

S D Zakharov1, M Lindeberg, Y Griko, Z Salamon, G Tollin, F G Prendergast, W A Cramer.   

Abstract

Atomic level structures have been determined for the soluble forms of several colicins and toxins, but the structural changes that occur after membrane binding have not been well characterized. Changes occurring in the transition from the soluble to membrane-bound state of the C-terminal 190-residue channel polypeptide of colicin E1 (P190) bound to anionic membranes are described. In the membrane-bound state, the alpha-helical content increases from 60-64% to 80-90%, with a concomitant increase in the average length of the helical segments from 12 to 16 or 17 residues, close to the length required to span the membrane bilayer in the open channel state. The average distance between helical segments is increased and interhelix interactions are weakened, as shown by a major loss of tertiary structure interactions, decreased efficiency of fluorescence resonance energy transfer from an energy donor on helix V of P190 to an acceptor on helix IX, and decreased resonance energy transfer at higher temperatures, not observed in soluble P190, implying freedom of motion of helical segments. Weaker interactions are also shown by a calorimetric thermal transition of low cooperativity, and the extended nature of the helical array is shown by a 3- to 4-fold increase in the average area subtended per molecule to 4,200 A2 on the membrane surface. The latter, with analysis of the heat capacity changes, implies the absence of a developed hydrophobic core in the membrane-bound P190. The membrane interfacial layer thus serves to promote formation of a highly helical extended two-dimensional flexible net. The properties of the membrane-bound state of the colicin channel domain (i.e., hydrophobic anchor, lengthened and loosely coupled alpha-helices, and close association with the membrane interfacial layer) are plausible structural features for the state that is a prerequisite for voltage gating, formation of transmembrane helices, and channel opening.

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Year:  1998        PMID: 9539728      PMCID: PMC22480          DOI: 10.1073/pnas.95.8.4282

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  56 in total

1.  Constraints imposed by protease accessibility on the trans-membrane and surface topography of the colicin E1 ion channel.

Authors:  Y L Zhang; W A Cramer
Journal:  Protein Sci       Date:  1992-12       Impact factor: 6.725

2.  Refined structure of the pore-forming domain of colicin A at 2.4 A resolution.

Authors:  M W Parker; J P Postma; F Pattus; A D Tucker; D Tsernoglou
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

3.  Differentiation between transmembrane helices and peripheral helices by the deconvolution of circular dichroism spectra of membrane proteins.

Authors:  K Park; A Perczel; G D Fasman
Journal:  Protein Sci       Date:  1992-08       Impact factor: 6.725

4.  Fourier transform infrared evidence for a predominantly alpha-helical structure of the membrane bound channel forming COOH-terminal peptide of colicin E1.

Authors:  P Rath; O Bousché; A R Merrill; W A Cramer; K J Rothschild
Journal:  Biophys J       Date:  1991-03       Impact factor: 4.033

5.  Structural analyses of a channel-forming fragment of colicin E1 incorporated into lipid vesicles. Fourier-transform infrared and tryptophan fluorescence studies.

Authors:  H Suga; K Shirabe; T Yamamoto; M Tasumi; M Umeda; C Nishimura; A Nakazawa; M Nakanishi; Y Arata
Journal:  J Biol Chem       Date:  1991-07-25       Impact factor: 5.157

6.  Crystal structure of insecticidal delta-endotoxin from Bacillus thuringiensis at 2.5 A resolution.

Authors:  J D Li; J Carroll; D J Ellar
Journal:  Nature       Date:  1991-10-31       Impact factor: 49.962

7.  A 'molten-globule' membrane-insertion intermediate of the pore-forming domain of colicin A.

Authors:  F G van der Goot; J M González-Mañas; J H Lakey; F Pattus
Journal:  Nature       Date:  1991-12-05       Impact factor: 49.962

Review 8.  Structure-function of the channel-forming colicins.

Authors:  W A Cramer; J B Heymann; S L Schendel; B N Deriy; F S Cohen; P A Elkins; C V Stauffacher
Journal:  Annu Rev Biophys Biomol Struct       Date:  1995

9.  pH-dependent stability and membrane interaction of the pore-forming domain of colicin A.

Authors:  A Muga; J M Gonzalez-Manas; J H Lakey; F Pattus; W K Surewicz
Journal:  J Biol Chem       Date:  1993-01-25       Impact factor: 5.157

10.  Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands.

Authors:  N N Kalnin
Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

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  16 in total

1.  Identification of specific residues in colicin E1 involved in immunity protein recognition.

Authors:  M Lindeberg; W A Cramer
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

2.  Structure in the channel forming domain of colicin E1 bound to membranes: the 402-424 sequence.

Authors:  L Salwiński; W L Hubbell
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

3.  Unfolding and refolding of cytochrome c driven by the interaction with lipid micelles.

Authors:  N Sanghera; T J Pinheiro
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

4.  Tuning the membrane surface potential for efficient toxin import.

Authors:  Stanislav D Zakharov; Tatyana I Rokitskaya; Vladimir L Shapovalov; Yuri N Antonenko; William A Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

5.  Evidence for crucial electrostatic interactions between Bcl-2 homology domains BH3 and BH4 in the anti-apoptotic Nr-13 protein.

Authors:  Philippe Lalle; Abdel Aouacheria; Agnès Dumont-Miscopein; Martin Jambon; Séverine Venet; Hélène Bobichon; Pierre Colas; Gilbert Deléage; Christophe Geourjon; Germain Gillet
Journal:  Biochem J       Date:  2002-11-15       Impact factor: 3.857

6.  pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path.

Authors:  Oleg A Andreev; Alexander G Karabadzhak; Dhammika Weerakkody; Gregory O Andreev; Donald M Engelman; Yana K Reshetnyak
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

7.  Interactions of apomyoglobin with membranes: mechanisms and effects on heme uptake.

Authors:  Grégory Vernier; Alexandre Chenal; Heidi Vitrac; Roya Barumandzadhe; Caroline Montagner; Vincent Forge
Journal:  Protein Sci       Date:  2007-01-22       Impact factor: 6.725

8.  Membrane partitioning of the pore-forming domain of colicin A. Role of the hydrophobic helical hairpin.

Authors:  Ivan L Bermejo; Cristina Arnulphi; Alain Ibáñez de Opakua; Marián Alonso-Mariño; Félix M Goñi; Ana R Viguera
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

9.  Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: application to α-helices.

Authors:  Maksim Grechko; Martin T Zanni
Journal:  J Chem Phys       Date:  2012-11-14       Impact factor: 3.488

10.  The Cytoplasm-Entry Domain of Antibacterial CdiA Is a Dynamic α-Helical Bundle with Disulfide-Dependent Structural Features.

Authors:  Nicholas L Bartelli; Sheng Sun; Grant C Gucinski; Hongjun Zhou; Kiho Song; Christopher S Hayes; Frederick W Dahlquist
Journal:  J Mol Biol       Date:  2019-06-08       Impact factor: 5.469

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