Literature DB >> 9533704

Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations.

S J Marrink1, O Berger, P Tieleman, F Jähnig.   

Abstract

Lipid adhesion forces can be measured using several experimental techniques, but none of these techniques provide insight on the atomic level. Therefore, we performed extensive nonequilibrium molecular dynamics simulations of a phospholipid membrane in the liquid-crystalline phase out of which individual lipid molecules were pulled. In our method, as an idealization of the experimental setups, we have simply attached a harmonic spring to one of the lipid headgroup atoms. Upon retraction of the spring, the force needed to drag the lipid out of the membrane is recorded. By simulating different retraction rates, we were able to investigate the high pull rate part of the dynamical spectrum of lipid adhesion forces. We find that the adhesion force increases along the unbinding path, until the point of rupture is reached. The maximum value of the adhesion force, the rupture force, decreases as the pull rate becomes slower, and eventually enters a friction-dominated regime. The computed bond lengths depend on the rate of rupture, and show some scatter due to the nonequilibrium nature of the experiment. On average, the bond length increases from approximately 1.7 nm to 2.3 nm as the rates go down. Conformational analyses elucidate the detailed mechanism of lipid-membrane bond rupture. We present results of over 15 ns of membrane simulations. Implications for the interpretation and understanding of experimental rupture data are discussed.

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Year:  1998        PMID: 9533704      PMCID: PMC1302572          DOI: 10.1016/S0006-3495(98)74016-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

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Journal:  Biophys J       Date:  1991-04       Impact factor: 4.033

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Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

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Authors:  S Izrailev; S Stepaniants; M Balsera; Y Oono; K Schulten
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

4.  Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature.

Authors:  O Berger; O Edholm; F Jähnig
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

Review 5.  Models for the specific adhesion of cells to cells.

Authors:  G I Bell
Journal:  Science       Date:  1978-05-12       Impact factor: 47.728

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Authors:  H Grubmüller; B Heymann; P Tavan
Journal:  Science       Date:  1996-02-16       Impact factor: 47.728

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Journal:  Q Rev Biophys       Date:  1980-02       Impact factor: 5.318

8.  Quantitative determination of conformational disorder in the acyl chains of phospholipid bilayers by infrared spectroscopy.

Authors:  R Mendelsohn; M A Davies; J W Brauner; H F Schuster; R A Dluhy
Journal:  Biochemistry       Date:  1989-10-31       Impact factor: 3.162

9.  Raman scattering in bilayers of saturated phosphatidylcholines. Experiment and theory.

Authors:  D A Pink; T J Green; D Chapman
Journal:  Biochemistry       Date:  1980-01-22       Impact factor: 3.162

Review 10.  The covalent modification of eukaryotic proteins with lipid.

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Journal:  J Cell Biol       Date:  1987-06       Impact factor: 10.539

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  64 in total

1.  Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel.

Authors:  C E Capener; I H Shrivastava; K M Ranatunga; L R Forrest; G R Smith; M S Sansom
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  Structure and dynamics of K channel pore-lining helices: a comparative simulation study.

Authors:  I H Shrivastava; C E Capener; L R Forrest; M S Sansom
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

3.  An alamethicin channel in a lipid bilayer: molecular dynamics simulations.

Authors:  D P Tieleman; H J Berendsen; M S Sansom
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

4.  Filter flexibility in a mammalian K channel: models and simulations of Kir6.2 mutants.

Authors:  Charlotte E Capener; Peter Proks; Frances M Ashcroft; Mark S P Sansom
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

5.  Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer.

Authors:  I H Shrivastava; M S Sansom
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

6.  KcsA closed and open: modelling and simulation studies.

Authors:  John Holyoake; Carmen Domene; Joanne N Bright; Mark S P Sansom
Journal:  Eur Biophys J       Date:  2003-10-22       Impact factor: 1.733

7.  Analysis methods for identifying coordinated movements during ligand unbinding.

Authors:  P L Chau; P W A Howe
Journal:  J Comput Aided Mol Des       Date:  2002-10       Impact factor: 3.686

8.  Steered molecular dynamics simulation on the binding of NNRTI to HIV-1 RT.

Authors:  Lingling Shen; Jianhua Shen; Xiaomin Luo; Feng Cheng; Yechun Xu; Kaixian Chen; Edward Arnold; Jianping Ding; Hualiang Jiang
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

9.  K(+) versus Na(+) ions in a K channel selectivity filter: a simulation study.

Authors:  Indira H Shrivastava; D Peter Tieleman; Philip C Biggin; Mark S P Sansom
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

10.  Filter flexibility and distortion in a bacterial inward rectifier K+ channel: simulation studies of KirBac1.1.

Authors:  Carmen Domene; Alessandro Grottesi; Mark S P Sansom
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

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