Literature DB >> 952482

The peak of the likelihood curve in linkage testing.

C A Smith, E Sturt.   

Abstract

It is often suggested that when z-scores are used for linkage estimation, a maximum z-score of 3 (or maximum antilod score, M = 1000) is good evidence for the presence of linkage. It is pointed out that a better formula, applicable if nothing more is known about the loci concerned, would be that the probability that linkage is present is roughly 1--4/Msigma, whereas sigma is the standard error, i.e. square root(2-3 X downward curvature of z curve at peak). A consideration of typical cases suggests that a value M = 1000 would imply something like a 90% chance of linkage. It would seem simpler to use the formula, probability of linkage approximately to 1--H/20, where H is the average height of the antilod curve.

Mesh:

Year:  1976        PMID: 952482     DOI: 10.1111/j.1469-1809.1976.tb00146.x

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


  5 in total

1.  Estimation of recombination frequency in genetic linkage studies.

Authors:  E V Nordheim; D M O'Malley; R P Guries
Journal:  Theor Appl Genet       Date:  1983-09       Impact factor: 5.699

2.  Criteria to optimize designs for detection and estimation of linkage between marker loci from segregating populations containing several families.

Authors:  S van der Beek; J A van Arendonk
Journal:  Theor Appl Genet       Date:  1993-04       Impact factor: 5.699

3.  Bayesian linkage analysis, or: how I learned to stop worrying and love the posterior probability of linkage.

Authors:  V J Vieland
Journal:  Am J Hum Genet       Date:  1998-10       Impact factor: 11.025

4.  Multipoint linkage analysis.

Authors:  N E Morton; C J MacLean; R Lew; S Yee
Journal:  Am J Hum Genet       Date:  1986-06       Impact factor: 11.025

5.  Genetic polymorphism and linkage of the sixth and seventh complement components (C6 and C7) in the common marmoset.

Authors:  D B Whitehouse
Journal:  Biochem Genet       Date:  1984-02       Impact factor: 1.890

  5 in total

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