Literature DB >> 9521933

SeqHelp: a program to analyze molecular sequences utilizing common computational resources.

M K Lee1, E D Lynch, M C King.   

Abstract

Here we describe a tool to analyze molecular sequences utilizing the internet and existing computational resources for molecular biology. The computer program SeqHelp organizes information from database searches, gene structure prediction, and other information to generate multiply aligned, hypertext-linked reports to allow for fast analysis of molecular sequences. The efficient and economical strategy in this program can be employed to study molecular sequences for gene cloning, mutation analysis, and identical sequence search projects.

Mesh：

Year:  1998        PMID： 9521933      PMCID： PMC310699          DOI： 10.1101/gr.8.3.306

Source DB:  PubMed          Journal:  Genome Res        ISSN： 1088-9051            Impact factor:   9.043


  11 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Rapid and sensitive sequence comparison with FASTP and FASTA.

Authors:  W R Pearson
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

3.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Entrez: molecular biology database and retrieval system.

Authors:  G D Schuler; J A Epstein; H Ohkawa; J A Kans
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

6.  PowerBLAST: a new network BLAST application for interactive or automated sequence analysis and annotation.

Authors:  J Zhang; T L Madden
Journal:  Genome Res       Date:  1997-06       Impact factor: 9.043

7.  Genotator: a workbench for sequence annotation.

Authors:  N L Harris
Journal:  Genome Res       Date:  1997-07       Impact factor: 9.043

8.  CLUSTAL: a package for performing multiple sequence alignment on a microcomputer.

Authors:  D G Higgins; P M Sharp
Journal:  Gene       Date:  1988-12-15       Impact factor: 3.688

9.  Nonsyndromic deafness DFNA1 associated with mutation of a human homolog of the Drosophila gene diaphanous.

Authors:  E D Lynch; M K Lee; J E Morrow; P L Welcsh; P E León; M C King
Journal:  Science       Date:  1997-11-14       Impact factor: 47.728

10.  Recognizing exons in genomic sequence using GRAIL II.

Authors:  Y Xu; R Mural; M Shah; E Uberbacher
Journal:  Genet Eng (N Y)       Date:  1994
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  5 in total

1.  Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential.

Authors:  S Temnykh; G DeClerck; A Lukashova; L Lipovich; S Cartinhour; S McCouch
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

2.  From flies' eyes to our ears: mutations in a human class III myosin cause progressive nonsyndromic hearing loss DFNB30.

Authors:  Tom Walsh; Vanessa Walsh; Sarah Vreugde; Ronna Hertzano; Hashem Shahin; Smadar Haika; Ming K Lee; Moien Kanaan; Mary-Claire King; Karen B Avraham
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

3.  MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus).

Authors:  C M Hess; J Gasper; H E Hoekstra; C E Hill; S V Edwards
Journal:  Genome Res       Date:  2000-05       Impact factor: 9.043

4.  A novel sodium bicarbonate cotransporter-like gene in an ancient duplicated region: SLC4A9 at 5q31.

Authors:  L Lipovich; E D Lynch; M K Lee; M C King
Journal:  Genome Biol       Date:  2001-03-22       Impact factor: 13.583

5.  Genomic analysis of a heterogeneous Mendelian phenotype: multiple novel alleles for inherited hearing loss in the Palestinian population.

Authors:  Tom Walsh; Amal Abu Rayan; Judeh Abu Sa'ed; Hashem Shahin; Jeanne Shepshelovich; Ming K Lee; Koret Hirschberg; Mustafa Tekin; Wa'el Salhab; Karen B Avraham; Mary-Claire King; Moien Kanaan
Journal:  Hum Genomics       Date:  2006-01       Impact factor: 4.639
  5 in total

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